FC876600

Overview
NameFC876600
Unique NameFC876600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.117e-63
Identity = 117/155 (75.48%), Postives = 131/155 (84.52%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKE-TMEDWDQDTLEKVVESKNKEY 526
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKGEKIDIYSD RD++  M++WDQ+TLEKVVESK  EY
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEY 155          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 3.117e-63
Identity = 119/156 (76.28%), Postives = 129/156 (82.69%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQDTLEKVVESKNKEY 526
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQRKGEKIDIY+DKRD ETMEDWDQ+TLEKVV SK  EY
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEY 156          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 76/161 (47.20%), Postives = 98/161 (60.87%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQDTLEKVVESKNKE 523
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD+  LE+VV  K+ E
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELEKDTMENWDEKKLEEVVNKKHGE 169          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQDTLEKVVESKNKE 523
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD+  LE+VV  K+ E
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGE 168          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQDTLEKVVESKNKE 523
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD+  LE+VV  K+ E
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGE 168          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQDTLEKVVESKNKE 523
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD+  LE+VV  K+ E
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGE 168          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.409e-31
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQDTLEKVVESKNKE 523
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD+  LE+VV  K+ E
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGE 168          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.009e-31
Identity = 75/161 (46.58%), Postives = 97/161 (60.25%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQDTLEKVVESKNKE 523
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD+  LE+VV  K+ E
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGE 169          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.561e-30
Identity = 78/159 (49.06%), Postives = 97/159 (61.01%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-DKETMEDWDQDTLEKVVESK 514
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K G  C KG +CKF+HDL   RK EKIDIY+D+R D++TME+WD+  L+ VVE K
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKK 159          
BLAST of FC876600 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.663e-30
Identity = 66/154 (42.86%), Postives = 95/154 (61.69%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR---DKETMEDWDQDTLEKVVESKN 517
            MPPK+  +A+ A K+K   DKTFG+KNKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDPKS++C  +K G C KG KCKFSHDLNV R+ EK D+Y D R   + +TM++WD++ L KV+ SK+
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEKKDLYQDTRSEKENDTMDNWDEEKLRKVILSKH 153          
The following BLAST results are available for this feature:
BLAST of FC876600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
C3H21_ARATH3.117e-6375.48Zinc finger CCCH domain-containing protein 21 OS=A... [more]
C3H11_ORYSJ3.117e-6376.28Zinc finger CCCH domain-containing protein 11 OS=O... [more]
ZC3HF_XENTR2.409e-3147.20Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_RAT2.409e-3145.56Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE2.409e-3145.56Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN2.409e-3145.56Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN2.409e-3145.56Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENLA7.009e-3146.58Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_DICDI1.561e-3049.06Zinc finger CCCH domain-containing protein 15 homo... [more]
TMA46_YEAST2.663e-3042.86Translation machinery-associated protein 46 OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC12RM1 EHR Citrus clementina cDNA clone KN0AAN2DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876600 ID=FC876600; Name=FC876600; organism=Citrus clementina; type=EST; length=528bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAAGAAACAATGGAGGATTGGGATCAGGACACTTTGGAGAAGG
TTGTGGAATCAAAGAATAAGGAATACCA
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