FC876603
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44 Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L KIGI+AKQPNSAI+KCARVQLIKNGKKIAAFVP+DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 47 KGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142 HSP 2 Score: 105.145 bits (261), Expect = 3.747e-22 Identity = 51/83 (61.45%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWKKPFAGSSHAKGIVLEENRYQGKAAQLRYQKMCSSSADQEWKEDCSF 354
MGKTRGMG RKLK HR+RQRWADKSYKKSHLG EWKKPFAGSSHAKGIVLE+ + K +K + K+ +F
Sbjct: 1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44 Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L KIGI+AKQPNSAI+KCARVQLIKNGKKIAAFVP+DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 47 KGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142 HSP 2 Score: 100.523 bits (249), Expect = 9.228e-21 Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWKKPFAGSSHAKGIVLEENRYQGKAAQLRYQKMCSSSADQEWKEDCSF 354
MGKT GMG RKLK HR+ QRWADKSYKKSHLG EWKKPFAGSSHAKGIVLE+ + K +K + K+ +F
Sbjct: 1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44 Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L KIGI+AKQPNSAI+KCARVQLIKNGKKIAAFVP+DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 47 KGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142 HSP 2 Score: 99.7525 bits (247), Expect = 1.574e-20 Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWKKPFAGSSHAKGIVLEENRYQGKAAQLRYQKMCSSSADQEWKEDCSF 354
MGKTRGMG GRKLKR R QRWADK YKKSHLG EWKKPFAGSSHAKGIVLE+ + K +K + K+ +F
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44 Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L KIGI+AKQPNSAI+KCARVQLIKNGKKIAAFVP+DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 47 KGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142 HSP 2 Score: 88.9669 bits (219), Expect = 2.779e-17 Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWKKPFAGSSHAKGIVLEENRYQGKAAQLRYQKMCSSSADQEWKEDCSF 354
MGKTRGMG GRKLK+ R QRWADK YKKS+ G EWKKPFA SSHAKGIVLE+ + K +K + K+ +F
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAF 83
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.759e-41 Identity = 80/96 (83.33%), Postives = 89/96 (92.71%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L K+G++AKQPNSAI+KC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143 HSP 2 Score: 76.6406 bits (187), Expect = 1.427e-13 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
MGK RG+ T RK + HR+ QRW DK YKK+HLG WK PF G+SHAKGIVLE+ + K
Sbjct: 1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.369e-40 Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L K+G++AKQPNSAI+KC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143 HSP 2 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
MGK RG+ T RK HR+ QRWADK YKK+H+G WK PF G+SHAKGIVLE+ + K
Sbjct: 1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 60
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.369e-40 Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L K+G++AKQPNSAI+KC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143 HSP 2 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
MGK RG+ T RK HR+ QRWADK YKK+H+G WK PF G+SHAKGIVLE+ + K
Sbjct: 1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 60
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.789e-40 Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L K+G++AKQPNSAI+KC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143 HSP 2 Score: 82.8037 bits (203), Expect = 1.991e-15 Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
MGK RG+ T RKLK HR+ QRW DK YKKSHLG WK PF G+SHAKGIVLE+ + K
Sbjct: 1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAK 60
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.336e-40 Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L K+G++AKQPNSAI+KC RVQLIKNGKKI AFVP+DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143 HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12 Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
MGK RG+ T RKL+ HR+ Q+W DK YKK+HLG K PF G+SHAKGIVLE+ + K
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3) HSP 1 Score: 165.622 bits (418), Expect = 2.336e-40 Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 2
Query: 245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
K + L K+G++AKQPNSAI+KC RVQLIKNGKKI AFVP+DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct: 48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143 HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
MGK RG+ T RKL+ HR+ +W DK YKK+HLG K PF G+SHAKGIVLE+ + K
Sbjct: 1 MGKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60 The following BLAST results are available for this feature:
BLAST of FC876603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876603 ID=FC876603; Name=FC876603; organism=Citrus clementina; type=EST; length=709bpback to top |