FC876618

Overview
NameFC876618
Unique NameFC876618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14566 contig Ccv1_Contig14566:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876618 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.398e-55
Identity = 102/164 (62.20%), Postives = 128/164 (78.05%), Query Frame = 3 
Query:  237 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAIGG--DATTSAD 722
            N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQLQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  +++ +NP   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND +VL+KLGEAMG+ + G  D T SA+
Sbjct:   45 NAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLGEAMGMPVAGLPDQTVSAE 208
The following BLAST results are available for this feature:
BLAST of FC876618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH6.398e-5562.20Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1AG02RM1 EHR Citrus clementina cDNA clone KN0AAN1AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876618 ID=FC876618; Name=FC876618; organism=Citrus clementina; type=EST; length=758bp
GCGCGAGGGAATTTTAAAACCCAATCTAATCTCAATCTCGTTCACAGTCT
CTCCGATTCAGCAGCTGTTTAGTTCGCATGGCGTCTCCTCCCACCAAGGA
TGCTCCCGCTGATAAGAAAGCAGAAGGATCGACCCCTAAGTCAGAAGCAA
CTTCGGGGTCTGTTAGAGACTCATCCAGTTCGCCTTCCGCTGCTTCTGCT
GCAAGTGCTTTTCCAGGAGTTGGTGGCGCTGCTCCAAATCCTTTTGATTT
CTCCGCCATGAGTGGCCTTCTTAATGATCCGAGCATTAAAGAACTAGCTG
AACAGATTGCGAAAGATCCAGCATTCAATTCCATGGCCGAACAACTTCAG
AAAACTTTGCATGGTGCAAATGCTGAGGAGAGTATTCCACAGTTTGACAC
AACACAGTATTACTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTA
TGACTATGGCTGAGCGCCTTGGTAATGCTTTAATGCAGGACCCATCAATG
TCTCATATGATGGAGAGTTTGACAAACCCTACAAAAAAAGACCAGATTGA
GGAAAGAATGGCAAAAATCAAGGAAGATCCCTCTTTGAAGCCTATTTTGG
ATGAGATAGAGTCTGGTGGACCATCTGCTATGATGAAGTACTGGAATGAT
AAAGATGTTTTGCAGAAATTGGGTGAAGCAATGGGTCTTGCAATTGGTGG
GGATGCGACCACTTCTGCTGATAATGCGGGGGGCAAATGAAGCAAAAAAA
GTGGGAAA
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