FC876621

Overview
NameFC876621
Unique NameFC876621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10382 contig Ccv1_Contig10382:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_MOUSE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 70/160 (43.75%), Postives = 97/160 (60.62%), Query Frame = 2
Query:  134 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRMSTFVTVGVIDI 610
            ++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L H +QILY   I  + M LEL PG +V               R+V+PT H++T +FH QRA  A+E+F+  R+S +VTV   D+
Sbjct:    5 AYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDV 164          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_RAT (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 69/160 (43.12%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  134 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRMSTFVTVGVIDI 610
            ++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L H +QILY   I  + M LEL PG +V               R+++PT H++T +FH QRA  A+E+F++ R+S +VTV   D+
Sbjct:    5 AYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDV 164          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_HUMAN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 2
Query:  134 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRMSTFVTVGVIDI 610
            ++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L H +QILY   I  + M LEL PG +V               R ++PT H++T +FH QRA  A+E+F+  R+  +VTV   D+
Sbjct:    5 AYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDV 164          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_BOVIN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.317e-29
Identity = 68/155 (43.87%), Postives = 92/155 (59.35%), Query Frame = 2
Query:  134 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRMSTFVTV 595
            ++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L H +QILY   I  + M LEL PG +V               R ++PT H++T +FH QRA  A+E+F+  R+  +VTV
Sbjct:    5 AYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTV 159          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_DICDI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 51/152 (33.55%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  143 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFGNKG-GFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRMSTFVTV 595
            + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS +  + G GF +++A TPELW++ L H +QIL+   I+ +I  LEL  G                 AR ++P  H++T++FH++R   A++DF+   +  ++TV
Sbjct:    6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCHVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAPKGHLFTFEFHEERVKFARKDFKDNGLDQYITV 157          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_CANAL (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida albicans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.295e-22
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFGNKG-GFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRM 577
            I+EGDLV+ Y     +K + V +   F  R+G F+H   IG  +G  + G KG GF++LL PTPELWTL L H +QI+Y    +++I  L + PG  V              AR V+ +  V+TY+FH+ R   AK++ E  ++
Sbjct:   10 IEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGFIHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTVTLSGKVFTYEFHEPRYLEAKKELEEHKL 153          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_KLULA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis GN=TRM61 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 53/144 (36.81%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----GNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFE 565
            IKEGDLV+ +   D +K + V     F  R+GAF HSD IGKPFGS +       N+ GF+++L PTPELW++ L H +QI+Y    ++++  +E  P   V              AR+     H+++Y+FH+ R   AK++F+
Sbjct:   11 IKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSNRFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAFARSAG---HLFSYEFHEVRYEQAKQEFK 151          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_YEAST (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Saccharomyces cerevisiae GN=GCD14 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----GNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFE 565
            IKEGDL +++   D +K V++     F  R+G+F H D IGKP+GS +       NK  FV++L PTPELWTL L H +QI+Y    ++++  L   P   V              AR+V    H+++++FH  R   A E+F+
Sbjct:   13 IKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSNKFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAFARSVG---HLFSFEFHHIRYEQALEEFK 153          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_DEBHA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Debaryomyces hansenii GN=TRM61 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFGNKG-GFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFE 565
            I+EGDLV+ +     +K + V + S    R+G F+H   IG  +G  + G KG GF++LL PTPELWT+ L H +QI+Y    +++I  L +  G  V              AR +     ++TY+FH+ R   AK++ E
Sbjct:   10 IEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGFIHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTIGVEGRLFTYEFHEPRYIEAKKELE 149          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_CRYNE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFGNKG--GFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFE 565
            I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS +       G+V++L PTPELWTL L H +QILY+  I+++ M L +  G  V              +R+V P+  V ++++H QR  +A ++FE
Sbjct:   14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHVLRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPSGQVMSFEYHRQRFETALKEFE 154          
The following BLAST results are available for this feature:
BLAST of FC876621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TRM61_MOUSE2.159e-3043.75tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_RAT4.809e-3043.13tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_HUMAN8.203e-3043.13tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_BOVIN5.317e-2943.87tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DICDI3.338e-2333.55tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANAL6.295e-2237.50tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_KLULA8.222e-2236.81tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YEAST1.005e-1936.11tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DEBHA3.819e-1935.00tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CRYNE4.988e-1934.75tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AG08RM1 EHR Citrus clementina cDNA clone KN0AAN1AG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876621 ID=FC876621; Name=FC876621; organism=Citrus clementina; type=EST; length=611bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAAGTGATCCAACGAAAAGAGAGATCCTTTACTCGATGCAT
TAAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAG
CTGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTT
AAACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCGGTAA
CAAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTC
TGGTTTTGAGCCATACAAGTCAGATACTTTACATTGCATATATTACCTTT
GTCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGG
AACTGGAAGTGGATCTTTGACAACGTCTCTTGCGAGGGCTGTATCTCCTA
CAAGACATGTCTATACTTATGATTTTCATGATCAAAGGGCTGCCTCAGCT
AAGGAAGACTTTGAGAGGACAAGAATGAGCACTTTTGTTACTGTGGGTGT
TATAGATATCC
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