FC876622

Overview
NameFC876622
Unique NameFC876622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length803
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876622_ssr747 microsatellite FC876622_ssr747:747..758. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5659 contig Ccv1_Contig5659:1193..1995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO6_ARATH (MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.197e-54
Identity = 120/247 (48.58%), Postives = 151/247 (61.13%), Query Frame = 3
Query:    9 LEYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIKQNK--GSVTPLSSRPSTPSYNMSPVHLLR---HYRG----EMDSVQTSPRRSMEQYLDSESPSPPHTFHGEGSSPHHIEQGFYIEYNKGVND-----PGPSQ---QHEIDIVTTKEFSFDK 698
            L  QE+G+V+KG P+VQ GD  FWF +PR IL LI+              WS +EFG+++CFHE   D++IRI++G+L+QILCSYVTLPLYALVTQMGS MKPT+FNERVA ALK+WHHTAKK IK  +   S TP SSRP+TP++  SP+HLLR   H R     E  +   SPR S     DS  P   H      +S H    G      K V+      PGP Q   QHEI  ++ ++FSF +
Sbjct:  340 LRIQEKGDVVKGTPLVQPGDHFFWFGRPRFILFLIHLVLFTNAFQLAFFVWSTYEFGLKNCFHESRVDVIIRISIGLLVQILCSYVTLPLYALVTQMGSKMKPTVFNERVATALKSWHHTAKKNIKHGRTSESTTPFSSRPTTPTHGSSPIHLLRNAPHKRSRSVDESFANSFSPRNS---DFDSWDPESQHETAETSNSNHRSRFGEEESEKKFVSSSVELPPGPGQIRTQHEISTISLRDFSFKR 583          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO12_ARATH (MLO-like protein 12 OS=Arabidopsis thaliana GN=MLO12 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.563e-54
Identity = 114/221 (51.58%), Postives = 141/221 (63.80%), Query Frame = 3
Query:    9 LEYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIKQ-NKGSVTPLSSRPSTPSYNMSPVHLLRHYRGEMDSVQTSPRRSMEQYLDSESPSPPH--TFHGEGSSPHHI--EQGFYIEYNKGVNDPGPSQQH 656
            L  QE+G+V+KG PVV+ GDDLFWF +PR IL LI+              WS +EF +++CFH  TEDI IRITMGVLIQ+LCSY+TLPLYALVTQMG++M+PTIFN+RVA ALK WHHTAKKQ K  + GS TP SSRP+TP++ MSPVHLL +Y       QTS          + SPSPP    + G+G    H    +     Y + + D   S  H
Sbjct:  334 LRIQEKGDVVKGAPVVEPGDDLFWFGRPRFILFLIHLVLFTNAFQLAFFVWSTYEFTLKNCFHHKTEDIAIRITMGVLIQVLCSYITLPLYALVTQMGTSMRPTIFNDRVANALKKWHHTAKKQTKHGHSGSNTPHSSRPTTPTHGMSPVHLLHNYNNRSLDQQTS---------FTASPSPPRFSDYSGQGHGHQHFFDPESQNHSYQREITDSEFSNSH 545          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO2_ARATH (MLO-like protein 2 OS=Arabidopsis thaliana GN=MLO2 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.561e-52
Identity = 104/199 (52.26%), Postives = 132/199 (66.33%), Query Frame = 3
Query:    9 LEYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIK--QNKGSVTPLSSRPSTPSYNMSPVHLLRHYRGEMDSVQTSPRRSMEQYLDSESPSPPHTFHGEGSSPHHIEQ 599
            L  QE+G+V++G PVVQ GDDLFWF +PR IL LI+              WS +EF + +CFHE T D+VIR+ +G ++QILCSYVTLPLYALVTQMGS MKPT+FN+RVA ALK WHHTAK + K  ++ GS TP SSRP+TP++  SP+HLL ++            RS+E Y    SPSP ++ HG     HH  Q
Sbjct:  343 LRIQEKGDVVRGAPVVQPGDDLFWFGKPRFILFLIHLVLFTNAFQLAFFAWSTYEFNLNNCFHESTADVVIRLVVGAVVQILCSYVTLPLYALVTQMGSKMKPTVFNDRVATALKKWHHTAKNETKHGRHSGSNTPFSSRPTTPTHGSSPIHLLHNFN----------NRSVENY--PSSPSPRYSGHG-----HHEHQ 524          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO5_ARATH (MLO-like protein 5 OS=Arabidopsis thaliana GN=MLO5 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.521e-33
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 3
Query:    9 LEYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIKQNKGSVTPLSSRPSTPS 437
            LE QER  V++G+P+V + D  FWFS+P L+L +I+              W W+EFG+ SCFH H   I+IR+ +GV +Q LCSY+TLPLYALVTQMGS MK ++F+++ + ALKNWH  AKK+      S TP  ++P  P+
Sbjct:  327 LEIQERHAVIQGMPLVNVSDRHFWFSRPALVLHIIHFILFQNAFEITYFFWIWYEFGLRSCFHHHFALIIIRVALGVGVQFLCSYITLPLYALVTQMGSTMKRSVFDDQTSKALKNWHKNAKKK------SETPGQTQPPLPN 463          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO9_ARATH (MLO-like protein 9 OS=Arabidopsis thaliana GN=MLO9 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.143e-31
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 3
Query:    9 LEYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQ 380
            LE QER  V++G+PVV + D  FWF +P L+L +I+              W W+EFG+ SCFH H   I+IR+ +GV +Q LCSY+TLPLYALVTQMGS MK ++F+E+ + AL+ WH  A+K+
Sbjct:  334 LEIQERHAVIQGMPVVNVSDQHFWFEKPDLVLHMIHFVLFQNAFEITYFFWIWYEFGLRSCFHHHFGLIIIRVCLGVGVQFLCSYITLPLYALVTQMGSTMKRSVFDEQTSKALEQWHKKARKK 457          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO10_ARATH (MLO-like protein 10 OS=Arabidopsis thaliana GN=MLO10 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.230e-31
Identity = 81/233 (34.76%), Postives = 118/233 (50.64%), Query Frame = 3
Query:   21 ERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIKQNKGSVTPLSS-------RPSTPSYNMSPVHLLRHYRGEMDSVQTSPRRSMEQYLDSESPSPPHTFHGEGSSPHHIEQGFYIEYNKGVNDPGPSQQHEIDIVTTKEFSFDK 698
            ER  V++G+P+V   D  FWF++P+L+L L++              W W+ FG++SCFH   + +++++++GV   ILCSY+TLPLYALVTQMGSNMK  +F+E++A ALK WH T KK  K+ K    P  +         ST S++ S   LLR           +   S   Y+ +           E  SP  IE    +     V D     ++  DI    +FSF K
Sbjct:  344 ERHAVVQGIPLVHGSDKYFWFNRPQLLLHLLHFALFQNAFQLTYFFWVWYSFGLKSCFHTDFKLVIVKLSLGVGALILCSYITLPLYALVTQMGSNMKKAVFDEQMAKALKKWHMTVKK--KKGKARKPPTETLGVSDTVSTSTSSFHASGATLLR---------SKTTGHSTASYMSNFEDQSMSDLEAEPLSPEPIEGHTLVR----VGDQNTEIEYTGDISPGNQFSFVK 561          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLO_HORVU (Protein MLO OS=Hordeum vulgare GN=MLO PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.741e-29
Identity = 72/183 (39.34%), Postives = 98/183 (53.55%), Query Frame = 3
Query:    9 LEYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIK---------QNKGSVTPLSSRPSTPSYNMSPVHLLRHYRGEMD---SVQTSPRRSME 521
            LE Q+R  V+KG PVV+  +  FWF +P  +L  I+              W+    G++ C+H      ++++ +G+ +Q LCSY+T PLYALVTQMGSNMK +IF+E+ + AL NW +TAK++ K         Q  G  TP       PS   SPVHLL    G  D   S  TSPR   E
Sbjct:  307 LEIQDRASVIKGAPVVEPSNKFFWFHRPDWVLFFIHLTLFQNAFQMAHFVWTVATPGLKKCYHTQIGLSIMKVVVGLALQFLCSYMTFPLYALVTQMGSNMKRSIFDEQTSKALTNWRNTAKEKKKVRDTDMLMAQMIGDATPSRGSSPMPSRGSSPVHLLHKGMGRSDDPQSAPTSPRTQQE 489          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLOH1_ORYSJ (MLO protein homolog 1 OS=Oryza sativa subsp. japonica GN=MLO1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.247e-27
Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 3
Query:   12 EYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTA--KKQIKQNKGSVTPLSSRPSTP--SYNMSPVHLLRHYRGEMD 488
            E Q+R  V++G PVV+  +  FWF++P  +L  I+              W+    G++ CFHE+    ++ + +G+ +Q+LCSY+T PLYALVTQMGSNMK TIF E+   AL NW   A  KK+++     +  +S   +TP  S + SPVHLL+ +R   D
Sbjct:  320 EIQDRATVIQGAPVVEPSNKYFWFNRPDWVLFFIHLTLFHNAFQMAHFVWTMATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLYALVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKVRDADAFLAQMSVDFATPASSRSASPVHLLQDHRARSD 482          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLOH1_ORYSI (MLO protein homolog 1 OS=Oryza sativa subsp. indica GN=MLO1 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27
Identity = 63/163 (38.65%), Postives = 95/163 (58.28%), Query Frame = 3
Query:   12 EYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTA--KKQIKQNKGSVTPLSSRPSTP--SYNMSPVHLLRHYRGEMD 488
            E Q+R  V++G P+V+  +  FWF++P  +L  I+              W+    G++ CFHE+    ++ + +G+ +Q+LCSY+T PLYALVTQMGSNMK TIF E+   AL NW   A  KK+++     +  +S   +TP  S + SPVHLL+ +R   D
Sbjct:  320 EIQDRATVIQGAPMVEPSNKYFWFNRPDWVLFFIHLTLFHNAFQMAHFVWTMATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLYALVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKVRDADAFLAQMSVDFATPASSRSASPVHLLQDHRARSD 482          
BLAST of FC876622 vs. ExPASy Swiss-Prot
Match: MLOH1_HORVU (MLO protein homolog 1 OS=Hordeum vulgare GN=MLO-H1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.056e-26
Identity = 67/174 (38.51%), Postives = 95/174 (54.60%), Query Frame = 3
Query:   12 EYQERGEVLKGVPVVQLGDDLFWFSQPRLIL*LINXXXXXXXXXXXXXXWSWFEFGIESCFHEHTEDIVIRITMGVLIQILCSYVTLPLYALVTQMGSNMKPTIFNERVAAALKNWHHTAKKQIK-QNKGSVTPLSSRPSTPSYNMSPVHLLRHYRGEMD---SVQTSPRRSME 521
            E  +R  V+KG P V+  +  FWF++P  +L L++              W+    G++ C+HE     + ++ +GV  QILCSY+T PLYALVTQMGS+MK +IF+E+ A AL NW   AK++ K ++   +       +TPS   SPVHLL       D   SV  SPR   E
Sbjct:  331 EIHDRESVVKGAPAVEPSNKYFWFNRPDWVLFLMHLTLFQNAFQMAHFVWTVATPGLKKCYHEKMAMSIAKVVLGVAAQILCSYITFPLYALVTQMGSHMKRSIFDEQTAKALTNWRKMAKEKKKARDAAMLMAQMGGGATPSVGSSPVHLLHKAGARSDDPQSVPASPRAEKE 504          
The following BLAST results are available for this feature:
BLAST of FC876622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MLO6_ARATH1.197e-5448.58MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6... [more]
MLO12_ARATH1.563e-5451.58MLO-like protein 12 OS=Arabidopsis thaliana GN=MLO... [more]
MLO2_ARATH5.561e-5252.26MLO-like protein 2 OS=Arabidopsis thaliana GN=MLO2... [more]
MLO5_ARATH1.521e-3347.55MLO-like protein 5 OS=Arabidopsis thaliana GN=MLO5... [more]
MLO9_ARATH4.143e-3149.19MLO-like protein 9 OS=Arabidopsis thaliana GN=MLO9... [more]
MLO10_ARATH9.230e-3134.76MLO-like protein 10 OS=Arabidopsis thaliana GN=MLO... [more]
MLO_HORVU1.741e-2939.34Protein MLO OS=Hordeum vulgare GN=MLO PE=1 SV=1[more]
MLOH1_ORYSJ1.247e-2739.26MLO protein homolog 1 OS=Oryza sativa subsp. japon... [more]
MLOH1_ORYSI2.779e-2738.65MLO protein homolog 1 OS=Oryza sativa subsp. indic... [more]
MLOH1_HORVU1.056e-2638.51MLO protein homolog 1 OS=Hordeum vulgare GN=MLO-H1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1AG10RM1 EHR Citrus clementina cDNA clone KN0AAN1AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876622 ID=FC876622; Name=FC876622; organism=Citrus clementina; type=EST; length=803bp
AATGGGAATTAGAATATCAAGAGAGAGGAGAAGTTCTAAAGGGAGTTCCA
GTAGTTCAGCTTGGTGATGACCTGTTTTGGTTCAGTCAGCCTCGCCTCAT
TCTTTAACTCATCAACTTTGTTCTCTTTCAGAACGCCTTTCAGCTCGCTT
TCTTTGCATGGAGTTGGTTTGAGTTCGGGATCGAATCTTGTTTCCATGAG
CATACAGAGGATATAGTCATCAGAATCACAATGGGGGTCCTCATTCAGAT
ACTTTGCAGCTATGTCACTCTCCCACTCTATGCCCTGGTAACTCAGATGG
GTTCAAATATGAAACCAACCATATTCAACGAAAGAGTAGCAGCAGCACTA
AAGAATTGGCATCATACAGCCAAAAAACAAATTAAACAAAACAAAGGGTC
TGTGACACCTTTGTCCAGCAGGCCATCCACCCCATCCTACAACATGTCTC
CGGTGCACCTCCTCCGCCATTACCGGGGCGAAATGGACAGCGTCCAGACG
TCACCGAGAAGATCCATGGAGCAGTATTTGGACTCCGAGTCACCGTCTCC
GCCGCACACGTTCCACGGCGAAGGCTCATCGCCACACCACATTGAACAAG
GTTTCTACATAGAATATAACAAGGGTGTAAATGACCCGGGGCCTAGCCAA
CAACATGAGATCGATATTGTAACAACGAAAGAATTTTCGTTTGATAAGAG
GACAATTACATAATTAAGCAAAATATTGCGGGATTCAGTTTCATGAAATT
AATTAATTATACATAAGAGCAACTTAATTTCAGGGCCTAGGCCCAAGGGT
GAC
back to top