FC876629

Overview
NameFC876629
Unique NameFC876629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length836
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876629_ssr9 microsatellite FC876629_ssr9:9..18. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876629_ssr669 microsatellite FC876629_ssr669:669..683. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876629_ssr20 microsatellite FC876629_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6451 contig Ccv1_Contig6451:235..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT16_ARATH (GATA transcription factor 16 OS=Arabidopsis thaliana GN=At3g06740 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.287e-34
Identity = 85/160 (53.12%), Postives = 104/160 (65.00%), Query Frame = 2
Query:  185 MMDPSDKGFESDEVNS-----------SGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEXXXXXXXXXXXXXXXXXXLGDSLKQRLYALGREVLMQRSSVEKQRK-KLGEEEQAAVLLMALSY-GSVYA 625
            M+DP++K  +S+ + S           S S   + +S++    KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR ++    E+                   GDSLKQRL  LGREV+MQRS+ E QR+ KLGEEEQAAVLLMALSY  SVYA
Sbjct:    1 MLDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNE----KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSED-------KKKKSHNRNPKFGDSLKQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149          
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT23_ARATH (GATA transcription factor 23 OS=Arabidopsis thaliana GN=At5g49300 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.356e-32
Identity = 80/149 (53.69%), Postives = 99/149 (66.44%), Query Frame = 2
Query:  185 MMDPSDKGF--ESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEXXXXXXXXXXXXXXXXXXLGDSLKQRLYALGREVLMQRSSVEKQRKKLGEEEQAAVLLMALSYGSVYA 625
            M+D S+K    +S+ + +     ++  ++  N  KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR   G T++                    G+SLKQ L  LG   + +RS+VEKQR+KLGEEEQAAVLLMALSYGSVYA
Sbjct:    1 MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRR---GGTEDN----KKLKKSSSGGGNRKFGESLKQSLMDLG---IRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139          
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT17_ARATH (GATA transcription factor 17 OS=Arabidopsis thaliana GN=At3g16870 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.084e-24
Identity = 73/172 (42.44%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  215 SDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEXXXXXXXXXXXXXXXXXXLGDSLK--------------------------------QRLYALGREV-LMQRSSVEKQR--KKLGEEEQAAVLLMALSYGSVYA 625
            SD  N + S    G  S     K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR+A LG+  EE                       K                                 +   LG +V +M+RS+VEK+R  +KLGEEE+AAVLLMALS  SVYA
Sbjct:   19 SDVDNENCSSSGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190          
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT22_ARATH (GATA transcription factor 22 OS=Arabidopsis thaliana GN=At5g26930 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  266 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA-ILGITKEEXXXXXXXXXXXXXXXXXXLGDSLKQRLYALGREVLMQRSS----VEKQRKKLGEEEQAAVLLMALSYGSVYA 625
            +E    + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RR+ +LGI                          ++       +++ +  SS      K+R+ L EEEQAA+ L+ LS  SV A
Sbjct:   20 EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI------------------------HIIRSHKSLASKKINLLSSSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120          
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT20_ARATH (Putative GATA transcription factor 20 OS=Arabidopsis thaliana GN=At4g26150 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.944e-15
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  170 KNLLKMMDPSDKGFESDEV-NSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAIL 403
            K ++   D S +   +D+  N S S+R +G ++D   + + C+DC TTKTPLWR GP GPKSLCNACGIR RK RRA +
Sbjct:  162 KAIITTSDSSKQHTNNDQSSNLSNSERQNGYNND--CVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 238          
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT24_ARATH (GATA transcription factor 24 OS=Arabidopsis thaliana GN=At5g56860 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.418e-14
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 2
Query:  263 SDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAIL 403
            S+ N + + C+DC TTKTPLWR GP GPKSLCNACGIR RK RRA +
Sbjct:  223 SNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 269          
BLAST of FC876629 vs. ExPASy Swiss-Prot
Match: GAT21_ARATH (GATA transcription factor 21 OS=Arabidopsis thaliana GN=At4g36620 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.292e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 2
Query:  233 SGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 394
            +GSK+  G     N + + CA+C TT TPLWR GP GPKSLCNACGIR +K+ R
Sbjct:   59 NGSKK-GGGGGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111          
The following BLAST results are available for this feature:
BLAST of FC876629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GAT16_ARATH3.287e-3453.13GATA transcription factor 16 OS=Arabidopsis thalia... [more]
GAT23_ARATH2.356e-3253.69GATA transcription factor 23 OS=Arabidopsis thalia... [more]
GAT17_ARATH3.084e-2442.44GATA transcription factor 17 OS=Arabidopsis thalia... [more]
GAT22_ARATH7.614e-1539.20GATA transcription factor 22 OS=Arabidopsis thalia... [more]
GAT20_ARATH9.944e-1550.63Putative GATA transcription factor 20 OS=Arabidops... [more]
GAT24_ARATH8.418e-1468.09GATA transcription factor 24 OS=Arabidopsis thalia... [more]
GAT21_ARATH2.292e-1157.41GATA transcription factor 21 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DE08RM1 EHR Citrus clementina cDNA clone KN0AAN2DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876629 ID=FC876629; Name=FC876629; organism=Citrus clementina; type=EST; length=836bp
GCACGAGGTCTCTCTCTCACATTCATTCATTCTTTCCTTCATTCATATTT
AGCCCCGGCCAGCTAATAGCTTCATTCCAAATCATTAGCTAGAGTGGTTA
GCTTCCGTTTTGATCAAAACCCACTTCAGTTTTCAATCTCTTTTCACCTG
GGTCAGTCTTAGTTTCTTGAAAAATCTTCTAAAAATGATGGATCCGAGTG
ACAAAGGATTTGAATCCGACGAAGTGAACAGCAGCGGCAGCAAGAGGCTT
GATGGGGTTTCTTCGGATGAAAATAGTATCAAAAAGACCTGTGCTGATTG
TGGGACCACCAAGACCCCACTGTGGCGCGGTGGCCCCGCTGGCCCCAAGT
CACTGTGTAATGCATGCGGGATAAGGAGCAGGAAGAAGAGGAGGGCAATA
TTGGGAATCACTAAAGAGGAGAAAAAATCAAAGAGAGGCAACAGCAATAG
CAGCAGTAATAGCTCAAGTAATAAGCTTGGGGATTCATTAAAGCAAAGAT
TGTACGCATTGGGAAGAGAAGTTTTGATGCAACGATCAAGTGTGGAGAAG
CAAAGAAAGAAGCTTGGAGAAGAAGAGCAAGCTGCTGTTTTGTTAATGGC
TTTATCTTATGGTTCTGTTTATGCTTAGTTGATTAACCGAAAAAAAAAAA
ATCAAATCAGTAATAATCATAATAATAATAATACTAGGATTTTATGGATG
TCCCCTTTGACCAATTTATATTATGATGATGAGTTTTGTTCATGGTTTTT
TGGGGACTTTTATTTAATTTTTTTAATTTTTGTAACTTTTTTCTTTTTTA
TTATTTTTGTTGTCTTTAGGTAATTGTAGTTTTTAA
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