FC876654

Overview
NameFC876654
Unique NameFC876654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.510e-100
Identity = 179/280 (63.93%), Postives = 215/280 (76.79%), Query Frame = 3
Query:   15 STFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQG-----------SKKETRVDVEEEKSEEV--GTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVGMIGD 815
            STF  GVSPYFYRWNESFLLLGTQF+GG+FL T+++HFLSD+NETF+ L  K YP+AFMLA+AGY LTM  D  + FV               S+++  V V+EE   E+  G D +    RTS  GDT LLI ALCFHS+FEGIAIG+S TK +AWRNLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YAISMGLACGVF+YVA+NHLI+KG+KP+ +CYFD P +KF+AV  GV +++V MI D
Sbjct:   74 STFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLACGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFLGVALLSVVMIWD 353          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.199e-89
Identity = 167/276 (60.51%), Postives = 209/276 (75.72%), Query Frame = 3
Query:   12 VSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT--------SKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVGMIGD 815
            V TF  GVSPYF +W++ FL+LGTQFAGGVFL T++MHFLSD++ETF+ L         S +YPFA+MLA AG++LTM  D +I  +  + ++ +  +  E++ ++   T         +SIGD+ILLI+ALCFHSVFEGIAIG+S TK +AWR LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAFAISSPIGV IGI IDATTQG IADWI+A+SM LACGVF+YV++NHL+AKG++P  K + D P +KFLAVL GV VIA+ MI D
Sbjct:   58 VLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSK-TQNDLELQGEDKSNQRSATT-------ETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVLFGVVVIAIVMIWD 325          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A1_DANRE (Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 66/255 (25.88%), Postives = 106/255 (41.57%), Query Frame = 3
Query:   87 FAGGVFLGTSMMHFLSD-----SNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNP-------------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIA 797
            FAGGVFL   ++  + D       E  K      +P    + + G+   +  + ++     +G + E    +    +      G+P             V F   S   + +L L+L  HSVFEG+AIG+  T  +       I +HK     ++ + L++   K   L    Y   FAI SP+G+GIGI +   T+      I A+  GLA G FIY+    ++     P      + P  K L +L G  ++A
Sbjct:   51 FAGGVFLSACLLDIIPDYLSDIHGELQKRDLDDGFPLPEFIMACGFFTVLILEKMV-LSCTEGHRNEETAPLLAPAAPNGHAHGHPSVNDLEGSGHHVHVDFHAHSSFRSFMLFLSLSLHSVFEGLAIGLQTTNAKVLEICIAILVHKSIIVFSLSVKLVQSAVKP--LWVVLYVTVFAIMSPLGIGIGIVV-IETERQAGGLIQAVLEGLAAGTFIYITFLEIL-----PHELNSSERPLLKVLFLLCGFSIMA 296          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A1_TAKRU (Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.822e-14
Identity = 73/265 (27.55%), Postives = 115/265 (43.40%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMH----FLSDSN-ETFKDLTSKSYPFAFMLASAGYLLTMFGDCII-NFVIKQGSKKETRVDVEEEKSEEVGTDGNP-----------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPF----FKFLAVLSGVG 788
            + + L L + FAGGVFL    +     +LSD N E        S+P    + +AG+   +  + I+ N    + + +E    + E KS      G+            V F+  S   + +L L+L  HS+FEG+AIG+  T  +       I +HK     ++ + L++     P L  AAY   FA+ SP+G+ IGI++    Q      I AI  G A G F+Y+    ++        K      F    F  +A LS +G
Sbjct:   41 HRTVLSLISCFAGGVFLSACFLDIIPDYLSDINTELHARQLETSFPLPEFIMAAGFFTVLILERIVLNCKEMRATHEERTTLIPERKSGHGHGHGDGPDPESSGHHVHVDFQAHSPFRSFMLFLSLSLHSIFEGLAIGLQTTDPKVVEICIAILVHKSIIVFSLAVKLVQ--SAIPPLWVAAYIGVFALMSPVGIAIGISV-MEAQLAAGPLIQAILEGFAAGTFVYITFLEILPHELNSPGKQLLKVLFLLLGFSIMAALSFLG 302          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: ZNTD_DICDI (Protein zntD OS=Dictyostelium discoideum GN=zntD PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.829e-13
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  330 VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRP-FLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAV 800
            V  + S+I    +L++AL  HS+FEG+A+GV +++   +  L  I  HKI A+ A+GI+ +    ++P FL      F F+++SPIG  +G+ I     G     +  I  G+A G F+YVA+  +I K     +       F   L   SG+ V+A+
Sbjct:  527 VVTKKSNILLPFILVIALSIHSLFEGLAMGVQSSEIRVFDILIAIFAHKILASFALGISTITSSNEKPSFLKLFLLVFVFSLTSPIGSILGMVI--VGSGVTGSMVPPILQGIASGTFLYVAVVEIIPKELSHDSNDILIKSFLLLLG-FSGMAVVAI 681          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A1_BOVIN (Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 65/274 (23.72%), Postives = 121/274 (44.16%), Query Frame = 3
Query:   30 GVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFR----------TSSIGDTI---LLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVI 794
            G +P      +  L L + FAGGVFL T ++  L D     +E    L  +  +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +            SS    +   +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G  ++
Sbjct:   56 GANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLGAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPPPREETRALLGTVNGGPQHWHDGLGVPQAGGASSAPSALRACVLVFSLALHSVFEGLAVGLQRDQARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGTAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAGFALL 316          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A1_HUMAN (Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.506e-12
Identity = 61/261 (23.37%), Postives = 114/261 (43.68%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK-----SYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFR-------------TSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVI 794
            L L + FAGGVFL T ++  L D      +  +       +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +              T S     +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G  ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPSPLEETRALLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELASSEQRILKVILLLAGFALL 316          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A1_MOUSE (Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.685e-12
Identity = 64/261 (24.52%), Postives = 116/261 (44.44%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFRTS----SIGDT---------ILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVI 794
            L L + FAGGVFL T ++  L D     +E  + L  +  +P    + + G+ L +  + I     +Q S         EE    +GT +G P  +         G T          +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G  ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSSPPHP-----EETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLR--VQVVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAGFALL 316          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A3_HUMAN (Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 71/284 (25.00%), Postives = 127/284 (44.72%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTS-----KSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEE-EKSEEVGTD------------GNPVFFRTSSIGDTIL--------------LILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVGMI 809
            ++  L L   F GGVFL T     L    E  + + S       YP A  +   G+ +T+F + +I    K+   K + +D+E      +VG+D            G+ ++      G ++               L  AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI++ R     P    A  +   +   P+G+G+G+ I+ + QG        +  GLA G F+++    ++AK  + ++         K L ++ G  V+A GM+
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLQKVLSLGHISTDYPLAETILLLGFFMTVFLEQLILTFRKE---KPSFIDLETFNAGSDVGSDSEYESPFMGGARGHALYVEPHGHGPSLSVQGLSRASPVRLLSLAFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAVHETLVAVALGISMAR--SAMPLRDAAKLAVTVSAMIPLGIGLGLGIE-SAQGVPGSVASVLLQGLAGGTFLFITFLEILAKELEEKSD-----RLLKVLFLVLGYTVLA-GMV 310          
BLAST of FC876654 vs. ExPASy Swiss-Prot
Match: S39A3_BOVIN (Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 72/283 (25.44%), Postives = 125/283 (44.17%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT-----SKSYPFAFMLASAGYLLTMFGDCIINFVIKQ----------GSKKETRVDVEEEKSEEVGTDGNPVF--------------FRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISS--PIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVGMI 809
            ++  L L   F GGVFL T     L    E  K++      S  YP A  +   G+ +T+F + ++    K+           +  +   D E E     G  G+ ++                 SS    + L+ AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI + R        L  A   A  +S+  P+G+ +G+ I+ + QG  +     +  GLA G F++V    ++AK  + ++         K L ++ G  V+A GM+
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLKEVLTLAHISTDYPLAETIMLLGFFMTVFLEQLVLTFRKERPAFIDLETFNASSDAGSDSEYESPFMGGPRGHALYAEPHGHSHGLSVQELSRSSPLRLLSLVFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAIHETLVAVALGINMAR----SAMALRDAAKLAVTVSAMIPLGISLGLGIE-SAQGMPSSVASVLLQGLAGGTFLFVTFFEILAKELEEKSD-----RLLKVLFLVLGYTVLA-GMV 310          
The following BLAST results are available for this feature:
BLAST of FC876654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ZIP2_ARATH1.510e-10063.93Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH1.199e-8960.51Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
S39A1_DANRE4.354e-1525.88Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE... [more]
S39A1_TAKRU2.822e-1427.55Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc3... [more]
ZNTD_DICDI1.829e-1332.28Protein zntD OS=Dictyostelium discoideum GN=zntD P... [more]
S39A1_BOVIN3.450e-1223.72Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=... [more]
S39A1_HUMAN4.506e-1223.37Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 P... [more]
S39A1_MOUSE7.685e-1224.52Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 P... [more]
S39A3_HUMAN2.236e-1125.00Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 P... [more]
S39A3_BOVIN2.236e-1125.44Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2DG07RM1 EHR Citrus clementina cDNA clone KN0AAN2DG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876654 ID=FC876654; Name=FC876654; organism=Citrus clementina; type=EST; length=825bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCAAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCTC
CTTTCTTTAAGTTTCTTGCTGTGCTTAGTGGAGTTGGAGTCATTGCAGTT
GGTATGATTGGGGATTAATCTCTTT
back to top