FC876655

Overview
NameFC876655
Unique NameFC876655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876655_ssr414 microsatellite FC876655_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5022 contig Ccv1_Contig5022:844..1611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.613e-53
Identity = 112/169 (66.27%), Postives = 131/169 (77.51%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGS--TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIFK---IPGNGLVGVDKIGCNINNNNDGKRLREM-ELLSLECSKKQRMIGA 498
            SDVGKLNRLVIPKQHAEKHFPL S S   +KG+L+NFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+V+F RSTG +RQLYIDWK R+GP ENPV+ V  +RLFGV+IF    +  N +V V    C       GKR R++ ++ +L CSKKQ +I A
Sbjct:  195 SDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRSGPRENPVQVV--VRLFGVDIFNVTTVKPNDVVAV----CG------GKRSRDVDDMFALRCSKKQAIINA 351          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.739e-50
Identity = 106/166 (63.86%), Postives = 125/166 (75.30%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIF-KIPGNGLVGVDKIGCNINNNNDGKRLREMELLSLECSKKQRMIGAS 501
            SDVGKLNRLVIPK HAEKHFPL S + S KG+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+VSF RS G D+QLYI WK+R+G   + ++  +++RLFGVNI  +   N +VG              KR+ + E+LSL CSKKQR+  AS
Sbjct:  195 SDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG---SDLDAGRVLRLFGVNISPESSRNDVVG-------------NKRVNDTEMLSLVCSKKQRIFHAS 344          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.423e-49
Identity = 106/171 (61.99%), Postives = 122/171 (71.35%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTS--------KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIFKIPGN--GLVGVDKIGCNINNNNDGKRLREMELLSLECSKKQRMI 492
            SDVGKLNRLVIPKQHAEKHFPL + +T+        KG+L+N ED TGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL+AGD+V F RSTG DRQLYI WK R+ PV+       ++RLFGVNIF +       V V+ +G         KR RE +L SL CSKKQ +I
Sbjct:  202 SDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRSSPVQT------VVRLFGVNIFNVSNEKPNDVAVECVG--------KKRSREDDLFSLGCSKKQAII 358          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41
Identity = 88/135 (65.19%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQ---SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWK-------ARTGPVENPV-EPVQMMRLFGVNIFKIP 372
            SDVGKLNRLVIPKQHAEKHFPLQ   +G  SKG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK L AGD+V F+R   S G D +L+ID K       A   P + P   PV+ +RLFGV++   P
Sbjct:  223 SDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAP 357          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.813e-40
Identity = 93/164 (56.71%), Postives = 113/164 (68.90%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPVQMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNDGKRLREMELLSLECSKKQRMI 492
            SDVGKLNRLVIPK  AEKHFPL  G+ +   KG+LLNFEDV GKVWRFRYSYWNSSQSYVLTKGWSRFVKEK L AGD++SF RS   D++ +I WK+++G     +E  ++MRLFGV+I     N +V V             K   E+ + SL C KKQR++
Sbjct:  190 SDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIGWKSKSG---LDLETGRVMRLFGVDISL---NAVVVV-------------KETTEVLMSSLRC-KKQRVL 333          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: NGA1_ARATH (B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.287e-38
Identity = 76/106 (71.70%), Postives = 86/106 (81.13%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHR---STGGDRQLYIDWKARTGPVENP 318
            SDVGKLNRLVIPKQHAE+ FPL S S  KGLLLNFED+TGK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDIVSF R    +G D +L+IDW+ R    ++P
Sbjct:   42 SDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRRRPKVPDHP 147          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.086e-37
Identity = 83/150 (55.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQ------------------SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGP---------------VENPVEPVQMMRLFGVNI 360
            SDVGKLNRLVIPKQHAEKHFPLQ                   G   KG+LLNFED  GKVW+FRYSYWNSSQSYVLTKGWSRFVKEK L AGD V F+R+ G + QL+ID K R  P                  P   V+ +RLFGV++
Sbjct:  200 SDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAAPPPAVKAIRLFGVDL 349          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y3209_ORYSJ (B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.940e-36
Identity = 73/98 (74.49%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTG--GDRQLYIDWKAR 297
            SDVGKLNRLVIPKQHAEK+FPL + S  KGLLL+FED TGK WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF R  G     +L+IDW+ R
Sbjct:   44 SDVGKLNRLVIPKQHAEKYFPLDAASNEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGVGEAARGRLFIDWRRR 141          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: NGA3_ARATH (B3 domain-containing transcription factor NGA3 OS=Arabidopsis thaliana GN=NGA3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.940e-36
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQ---LYIDWKAR 297
            SDVGKLNRLVIPKQHAE++FPL S +   G LLNF+D  GK+WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGDIVSF R  G + +   LYIDW+ R
Sbjct:   63 SDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHR 161          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y4814_ORYSJ (B3 domain-containing protein Os04g0581400 OS=Oryza sativa subsp. japonica GN=Os04g0581400 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.525e-35
Identity = 73/98 (74.49%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR--QLYIDWKAR 297
            SDVGKLNRLVIPKQHAEK+FPL S +  KGLLL+FED TGK+WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF R        +L+IDWK R
Sbjct:  117 SDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDWKRR 214          
The following BLAST results are available for this feature:
BLAST of FC876655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RAV2_ARATH3.613e-5366.27AP2/ERF and B3 domain-containing transcription rep... [more]
RAV1_ARATH3.739e-5063.86AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL1_ARATH2.423e-4961.99AP2/ERF and B3 domain-containing transcription rep... [more]
Y1934_ORYSJ9.230e-4165.19AP2/ERF and B3 domain-containing protein Os01g0693... [more]
RAVL4_ARATH7.813e-4056.71AP2/ERF and B3 domain-containing transcription fac... [more]
NGA1_ARATH4.287e-3871.70B3 domain-containing transcription factor NGA1 OS=... [more]
Y5498_ORYSJ8.086e-3755.33AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y3209_ORYSJ8.940e-3674.49B3 domain-containing protein Os03g0120900 OS=Oryza... [more]
NGA3_ARATH8.940e-3671.72B3 domain-containing transcription factor NGA3 OS=... [more]
Y4814_ORYSJ1.525e-3574.49B3 domain-containing protein Os04g0581400 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DG08RM1 EHR Citrus clementina cDNA clone KN0AAN2DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876655 ID=FC876655; Name=FC876655; organism=Citrus clementina; type=EST; length=768bp
GCACGAGGAAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCA
GCACGCGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGAC
TGCTCTTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTAC
TCCTACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCG
GTTCGTCAAGGAGAAGAATTTGAAAGCCGGTGACATTGTTAGCTTTCACA
GATCGACCGGTGGGGATAGGCAGCTTTACATTGATTGGAAAGCCAGAACA
GGACCGGTCGAGAACCCGGTCGAGCCGGTCCAGATGATGAGGCTATTTGG
GGTCAACATTTTCAAAATTCCTGGGAATGGTCTTGTTGGTGTCGATAAGA
TTGGGTGCAACATTAATAATAATAACGACGGCAAAAGGCTTAGAGAAATG
GAGCTCTTGTCTCTAGAGTGCAGCAAAAAACAAAGAATGATTGGAGCTTC
GTAACATCTTTTTTCTTTTTTCTTCTTTTTTGTAATCTTATTTCTTGTTG
TAATTTTTCTTTTCTTTTTTCCTTTTGGAGTTTTTGGAATTTTGAGGAGT
TTTAAGGGGAAAGAAGAGACTGGGGAAGGGTGGTGCCAGTAGTTGCAAGT
TGCAAAGGAAAAGGAAAAGGTTGAATTGTAAATTACAAGTGACAAAAGCT
GAAGAAAGCTGAAATTAGGTTGTAACAAAATTTTATAATTAAAAAAAAAA
AAGAAAAGAAAAAAAAAA
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