FC876676

Overview
NameFC876676
Unique NameFC876676
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876676_ssr637 microsatellite FC876676_ssr637:637..646. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10409 contig Ccv1_Contig10409:1..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876676 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.414e-22
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 2 
Query:   17 ISYAFTGGEAVAAAVSDLCPLLALTLILNGIQPVLSGVAVGCGWQTFXXXXXXXXXXXXXXXXXSLLGFYFKLGAKGIWSGMIGGTVMQTLILIWVTFRTDWNKEVQEALKRL 355
            +S AFT    V AAVSDL PLLA+++ LNGIQP+LSGVA+G GWQ                    +LGF   LG  GIW GMI G ++QTL LI +T +T+W  EV+ A +R+
Sbjct:  380 LSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
The following BLAST results are available for this feature:
BLAST of FC876676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH1.414e-2247.79Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BB08RM1 EHR Citrus clementina cDNA clone KN0AAN1BB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876676 ID=FC876676; Name=FC876676; organism=Citrus clementina; type=EST; length=647bp
GCACGAGGGTGATGTCATCAGCTACGCCTTCACTGGAGGCGAAGCGGTTG
CCGCAGCAGTCTCCGACCTCTGTCCGCTTCTTGCTTTGACCCTGATTCTT
AACGGCATCCAGCCTGTCTTGTCCGGTGTGGCTGTTGGGTGCGGATGGCA
AACATTTGTGGCGTATGTGAACGTGGGATGCTATTACGTCGTTGGGGTTC
CAGTGGGTTCACTTCTCGGTTTCTACTTCAAACTTGGTGCTAAGGGAATA
TGGTCTGGGATGATTGGCGGCACGGTGATGCAAACTTTAATTCTAATATG
GGTGACATTTCGAACAGACTGGAATAAAGAGGTACAAGAAGCCCTGAAGA
GATTGGATAAGTGGGAGGACAAGAAAAAGCCTCTTCTATAATGAGGAAAT
TAGAGGCAAGGATTTACAAATAGGTCGATGAACTTGGTTCGAAACTCGCA
AAATAAAAAGTGCAAGCGACCTTAATTTCTGATATTTTGCTCGATTGGGC
ACAAAAATTCCTCATGTCGTATGGCCTACTCAGTCCATGGCCGAGAATGT
AAAGGCTGCCTGCCTGTATGGCAAATAAAATCTTCTATTTTTTTGGTCTT
CCAAATTAAAAAAAAAAAAAAAAAACTGAGACTAGTTCTCTCTCTCT
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