FC876677

Overview
NameFC876677
Unique NameFC876677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.957e-61
Identity = 133/200 (66.50%), Postives = 152/200 (76.00%), Query Frame = 1
Query:   94 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAHNANALKAQLDQQKNVVNNLVSNTR 687
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPE ILEQAVLEMNDDL KMRQATAQVLAS KRLENKYKAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+A NA++LKAQLDQQK+VV+NLVSNTR
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVSNTR 183          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.343e-58
Identity = 124/199 (62.31%), Postives = 146/199 (73.37%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAHNANALKAQLDQQKNVVNNLVSNTR 687
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPE ILEQ V+EMN DL KMRQATAQVLAS K+L+NKYKAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+A NA ALK QLDQQK VV+NLVSNTR
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTR 194          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.740e-56
Identity = 118/162 (72.84%), Postives = 133/162 (82.10%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAHNANALKAQLDQQKNVVNNLVSNTR 687
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPE IL+QAVLEMNDDL KMRQATAQVLAS KRLENKYKAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYA NA++LKAQLDQQK VV NLVSNTR
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTR 180          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAHNANALKAQLDQQKNVVNNLVSN 681
            M LFDRL RVV++  N ++S  EDPE +LEQAV++M +DLV++RQA A+ +A  KR E +     Q ++ W  +A+LAL  GEE+LAREAL R+KS    A A + QL QQ+ +  NL  N
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRN 121          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: PSPA_SHIFL (Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-------KSYAHNANALKAQLDQQKNVV---NNLVSNTR 687
            M +F R A +V +  NA+L   EDP+ ++   + EM D LV++R  +A+ LA  K+L  + + A     +W  KA+LAL K  EDLAR AL  +       KS  H    +   L + K  +    N +S TR
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETR 133          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: PSPA_ECOLI (Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-------KSYAHNANALKAQLDQQKNVV---NNLVSNTR 687
            M +F R A +V +  NA+L   EDP+ ++   + EM D LV++R  +A+ LA  K+L  + + A     +W  KA+LAL K  EDLAR AL  +       KS  H    +   L + K  +    N +S TR
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETR 133          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: PSPA_ECO57 (Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 46/133 (34.59%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRR-------KSYAHNANALKAQLDQQKNVV---NNLVSNTR 687
            M +F R A +V +  NA+L   EDP+ ++   + EM D LV++R  +A+ LA  K+L  + + A     +W  KA+LAL K  EDLAR AL  +       KS  H    +   L + K  +    N +S TR
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETR 133          
BLAST of FC876677 vs. ExPASy Swiss-Prot
Match: PSPA_DEIRA (Phage shock protein A homolog OS=Deinococcus radiodurans GN=DR_1473 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 40/123 (32.52%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPENILEQAVLEMNDDLVKMRQATAQVLASHKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYAHNANALKAQLDQQKNVVNNLVSNTR 687
            M++FDRL+R++++  N ++S  EDP  I++QA+ +M       R   A  +A   +LE +     + + ++ +KA+ AL+ G EDLAREAL+R +++   A     Q   Q++ V+ L +  R
Sbjct:    1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLR 123          
The following BLAST results are available for this feature:
BLAST of FC876677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IM30_PEA2.957e-6166.50Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH2.343e-5862.31Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ3.740e-5672.84Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY34.459e-2548.76Uncharacterized protein sll0617 OS=Synechocystis s... [more]
PSPA_SHIFL1.758e-1334.59Phage shock protein A OS=Shigella flexneri GN=pspA... [more]
PSPA_ECOLI1.758e-1334.59Phage shock protein A OS=Escherichia coli (strain ... [more]
PSPA_ECO571.758e-1334.59Phage shock protein A OS=Escherichia coli O157:H7 ... [more]
PSPA_DEIRA2.296e-1332.52Phage shock protein A homolog OS=Deinococcus radio... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BB10RM1 EHR Citrus clementina cDNA clone KN0AAN1BB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876677 ID=FC876677; Name=FC876677; organism=Citrus clementina; type=EST; length=689bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCC
CCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGT
GAAGTCCTATGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAACA
TTTTAGAGCAAGCAGTACTTGAAATGAATGATGACTTGGTAAAGATGCGC
CAGGCCACGGCACAAGTGTTGGCATCTCACAAGCGGTTGGAAAATAAGTA
CAAAGCTGCAGAGCAAGCTTCTGAAGACTGGTATCGCAAAGCACAGCTTG
CTCTTCAAAAAGGGGAAGAAGATCTGGCACGTGAGGCTCTCAAGAGACGC
AAATCTTATGCACATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACA
AAAGAATGTTGTTAATAACCTTGTTTCTAATACTCGGCT
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