FC876678

Overview
NameFC876678
Unique NameFC876678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10380 contig Ccv1_Contig10380:59..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876678 vs. ExPASy Swiss-Prot
Match: WAP53_MESAU (Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.910e-45
Identity = 68/148 (45.95%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  257 LRCTYRAYDAVNEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 700
            LR ++RAY+ ++E+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++ L R
Sbjct:  252 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSR 397          

HSP 2 Score: 62.003 bits (149), Expect = 9.910e-45
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 SSFLTSSENKPLPIFSLPKNGISYDVNACSLAKDQDSYEASLVV---TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 255
            S  LT+S +  L I++LP    S        A +Q  Y   + V    EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA T
Sbjct:  170 SCILTNSADNTLRIYNLPPELYS--------ATEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFT 249          
BLAST of FC876678 vs. ExPASy Swiss-Prot
Match: WAP53_MOUSE (Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.854e-44
Identity = 68/148 (45.95%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  257 LRCTYRAYDAVNEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 700
            LR ++RAY+ ++E+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++ L R
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSR 393          

HSP 2 Score: 59.6918 bits (143), Expect = 4.854e-44
Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 SSFLTSSENKPLPIFSLPKNGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 255
            S  LT+S +  L I++LP    S          D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  166 SCILTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          
BLAST of FC876678 vs. ExPASy Swiss-Prot
Match: WAP53_RAT (Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 8.243e-44
Identity = 67/148 (45.27%), Postives = 101/148 (68.24%), Query Frame = 2
Query:  257 LRCTYRAYDAVNEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 700
            LR ++RAY+ ++E+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S +AFSP    + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++ L R
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSR 393          

HSP 2 Score: 60.077 bits (144), Expect = 8.243e-44
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 SSFLTSSENKPLPIFSLPKNGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 255
            S  LT+S +  L I++LP      ++ + S   D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  166 SCILTNSADNVLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          
BLAST of FC876678 vs. ExPASy Swiss-Prot
Match: WAP53_HUMAN (Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.370e-42
Identity = 67/148 (45.27%), Postives = 101/148 (68.24%), Query Frame = 2
Query:  257 LRCTYRAYDAVNEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 700
            LR ++RAY+ ++E+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP    + A GSY ++  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR++   ++ L R
Sbjct:  264 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGR 409          

HSP 2 Score: 56.9954 bits (136), Expect = 4.370e-42
Identity = 29/85 (34.12%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 SSFLTSSENKPLPIFSLPKNGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 255
            S  LT+S +  L I++LP   + ++      A+        L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  182 SCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 261          
BLAST of FC876678 vs. ExPASy Swiss-Prot
Match: WAP53_BOVIN (Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.260e-41
Identity = 65/148 (43.92%), Postives = 101/148 (68.24%), Query Frame = 2
Query:  257 LRCTYRAYDAVNEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYR 700
            LR ++R+Y+ ++E+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  ++   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+    ++ L R
Sbjct:  255 LRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLSR 400          

HSP 2 Score: 56.9954 bits (136), Expect = 1.260e-41
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 SSFLTSSENKPLPIFSLPKNGISYDVNACSLAKDQDSYEAS-----LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 255
            S  LT+S +  L I++LP            L  + +  E +     L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  173 SCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 252          
BLAST of FC876678 vs. ExPASy Swiss-Prot
Match: GNR1_SCHPO (Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe GN=gnr1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.353e-13
Identity = 39/152 (25.66%), Postives = 61/152 (40.13%), Query Frame = 2
Query:  260 RCTYRAYDAVNEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKL 694
            + +Y   D       +  + F   G  + AG    +  F++    ++    +   G K         GI S  + +P  +  LA+G+YS    IY +       +    E   GVTH+Q+  DG  LY G R    I  WD+R    +VY L
Sbjct:  143 KASYHMIDHQERYQGSHCLQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPMDSKTLAVGTYSNRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIEVWDIRYVRDMVYAL 294          

HSP 2 Score: 41.5874 bits (96), Expect = 2.353e-13
Identity = 25/85 (29.41%), Postives = 45/85 (52.94%), Query Frame = 1
Query:    1 SSFLTSSENKPLPIFSLPKNGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 255
            S+ L+ +E++ L  +++P + +S   +         SY+        E+VY + W+  M   DP+S +FA ++RD PI L + TT
Sbjct:   59 STILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----SPETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTT 139          
The following BLAST results are available for this feature:
BLAST of FC876678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WAP53_MESAU9.910e-4545.95Telomerase Cajal body protein 1 OS=Mesocricetus au... [more]
WAP53_MOUSE4.854e-4445.95Telomerase Cajal body protein 1 OS=Mus musculus GN... [more]
WAP53_RAT8.243e-4445.27Telomerase Cajal body protein 1 OS=Rattus norvegic... [more]
WAP53_HUMAN4.370e-4245.27Telomerase Cajal body protein 1 OS=Homo sapiens GN... [more]
WAP53_BOVIN1.260e-4143.92Telomerase Cajal body protein 1 OS=Bos taurus GN=W... [more]
GNR1_SCHPO2.353e-1325.66Guanine nucleotide-binding protein negative regula... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BB11RM1 EHR Citrus clementina cDNA clone KN0AAN1BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876678 ID=FC876678; Name=FC876678; organism=Citrus clementina; type=EST; length=703bp
TCAAGTTTCCTTACGAGTTCTGAAAACAAACCGCTTCCCATTTTCTCATT
GCCAAAAAATGGAATCAGCTATGACGTTAATGCCTGTTCTTTGGCTAAAG
ATCAAGATTCTTATGAGGCAAGCCTTGTTGTGACGGAAGGAGAGTCTGTT
TATGACTTCTGTTGGTTCCCACACATGTCTGCTTCAGATCCAACTAGTTG
TGTGTTTGCTTCCACCACTCGTGACCACCCAATTCATCTTTGGGATGCTA
CTACTGTTACGTTGCACATACCGGGCTTATGATGCTGTAAATGAAATCAC
TGCTGCCTTTTCAGTTGCATTCAATCCCACTGGTACTAAGATATTTGCTG
GATACAACAAATCTGTCCGAGTATTTGATGTACACCGCCCTGGTAGGGAT
TTTGAAAAGTATTCAACACTTAAGGGAAATAAAGAAGGCCAAGCAGGTAT
AATGTCTGCAATTGCTTTCAGTCCAACCCATACCGGGATGCTTGCTATCG
GTTCCTATAGCCAGACTTCAGCAATTTACAGGGAAGACAACATGGAACTC
TTATATGTTTTACATGGTCAAGAAGGTGGGGTTACACATGTCCAGTTCTC
AAGAGATGGAAATTATCTTTACACTGGAGGCCGAAAGGATCCTTACATAC
TGTGCTGGGATCTGCGAAAAGCTGTTCAAGTTGTATATAAGCTATACAGA
TCA
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