FC876706

Overview
NameFC876706
Unique NameFC876706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig891 contig Ccv1_Contig891:250..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876706 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    7 GGSQIGFLDIAFGCYLGWVRVTEKMIEVKLLDEVKTPGLFKWAERFCADAAVKDVMP-ETDKLAEFAKVLAKLRAS 231
            GG  +GF+D+  G YLGW    +K+I  +L+D  +TP L  W ERF A  A K V+P + DKL EF + L +  AS
Sbjct:  158 GGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEFRQTLLRWSAS 233
The following BLAST results are available for this feature:
BLAST of FC876706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GSTU6_ORYSJ2.075e-1144.74Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3AB04RM1 EHR Citrus clementina cDNA clone KN0AAN3AB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876706 ID=FC876706; Name=FC876706; organism=Citrus clementina; type=EST; length=677bp
GCACGAGGTGGAAGCCAAATTGGGTTTCTTGACATTGCATTTGGTTGCTA
CTTGGGATGGGTGAGAGTGACAGAGAAAATGATTGAGGTGAAGCTCCTTG
ATGAAGTCAAAACTCCTGGACTGTTCAAATGGGCTGAGAGATTCTGTGCT
GATGCCGCTGTCAAAGATGTTATGCCTGAGACTGATAAGCTTGCAGAGTT
TGCTAAGGTTCTTGCCAAACTCAGAGCTTCTGGCAAATGGAATTAAGAAG
CTTAATTCTGTGCTTGGAGGGGCACAAAAAAAAAGAAAAAAAAAAAAAGA
GTTGTTTCCAGAAATAAATTCGAATAAGAATTAAGTTTTGTTTTTGGTTT
CGTTTGGAACGGTAAAGCCTGTATCATTTGGGTTCTGTTATCGGGCTAGG
CTGCAGCCTCTCTCGTAGACTCATGTATACCAAGTGAAGGTATAAAGGTT
ATTGTGTTGTTTTTCTCCGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCAGGGGGG
GCCCCGGAACCCATTTCCCCCTATAGGGATTCTAATTAAATTTCCCTGCC
CGCCTTTTTACACCGTCGGGACGGGAAAACCCCTGCCTTTCCCCAATTTA
TCCCCTTTGCAAAACACCCCCTTTTCC
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