FC876708

Overview
NameFC876708
Unique NameFC876708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876708_ssr76 microsatellite FC876708_ssr76:76..85. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876708_ssr205 microsatellite FC876708_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10413 contig Ccv1_Contig10413:1..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.725e-47
Identity = 101/147 (68.71%), Postives = 113/147 (76.87%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            ++ + V+VPCSSL DIVTVRCGHC+NLWSVNMAAA QSLS  +    QA +YA PE     GSSS+ + KI + R  T   TE+R+VNR        PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF
Sbjct:   20 NIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF---QATNYAVPE----YGSSSRSHTKIPS-RISTRTITEQRIVNR-------PPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 151          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34
Identity = 81/153 (52.94%), Postives = 100/153 (65.36%), Query Frame = 2
Query:   89 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSL-SWQDVHHHQAPSYASPECRID------LGSSSKCNNKISAMRTPTNKAT----EERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            VSVP +S+L+IVTVRCGHC+NL SVN+     S  + QD HHH         C  D       G S+  ++  S +R P   A      ++     ++ H+  PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAH+P+IHF
Sbjct:   25 VSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSGYPEFGFSAASSS--SKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHF 175          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34
Identity = 86/177 (48.59%), Postives = 103/177 (58.19%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW--------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERVVNRRESPHST-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            D  + V VPCSSL   VTVRCGHC+NL SVN+        A+    L +               +V   QAP+      ASP       S+S C N   A  M +  NKAT+      + +P +  T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHF
Sbjct:   40 DTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHF 216          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34
Identity = 86/177 (48.59%), Postives = 103/177 (58.19%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNM--------AAAFQSLSW--------------QDVHHHQAPS-----YASPECRIDLGSSSKCNNKISA--MRTPTNKATEERVVNRRESPHST-TPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            D  + V VPCSSL   VTVRCGHC+NL SVN+        A+    L +               +V   QAP+      ASP       S+S C N   A  M +  NKAT+      + +P +  T EKRQRVPSAYN+FIK+EIQRIKA+NPDI+HREAFS AAKNWAHFPHIHF
Sbjct:   40 DTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHF 216          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.035e-33
Identity = 79/145 (54.48%), Postives = 91/145 (62.76%), Query Frame = 2
Query:   89 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHHHQAPSY---ASPECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            VSVP +SL  +VTVRCGHC+NL S+N+  +    S   +H    P      S   R D  SSS+  N +S           +R   R   P    PEKRQRVPSAYN+FIKEEIQRIKA NP+ISHREAFSTAAKNWAHFPHIHF
Sbjct:   24 VSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLSE--------NIDREAPRM--PPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHF 158          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.188e-33
Identity = 83/177 (46.89%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--HQAPSYASPECRIDL--------------------------GSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            D  + V VPCSSL   VTVRCGHC+NL SVN+             +  H  PS  SP     L                           SSS C +   AM+ P  K  ++     + +P S    PEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   34 DTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 210          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.188e-33
Identity = 83/177 (46.89%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQDVHH--HQAPSYASPECRIDL--------------------------GSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTT--PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            D  + V VPCSSL   VTVRCGHC+NL SVN+             +  H  PS  SP     L                           SSS C +   AM+ P  K  ++     + +P S    PEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   34 DTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 210          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.955e-32
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 2
Query:   89 VSVPCSSLLDIVTVRCGHCSNLWSVNMAAAFQSLSWQD--VHHHQAPSYASPECRIDLGSSSKCNNKISAMRTPT--NKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            VSVP +S+L+IVTVRCGHC++L SVN+    Q+L  +D    + +  + +  E   + GSSS+        R P   +K   E ++      H   PEKRQRVPSAYN+FIKEEI+RIKANNPDISHREAFSTAAKNWAHFP+IHF
Sbjct:   26 VSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYG------RVPMMFSKNDTEHML------HVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHF 159          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.123e-30
Identity = 79/166 (47.59%), Postives = 93/166 (56.02%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNMA-AAFQSLSWQDVHHHQAPSYASP------------------ECRIDLGSSSKCNNKISAMRTPTNKATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            D  + VSVP SSL   VTVRCGHCSNL SV ++  A    S  ++ H   P    P                     +   +S+   N+   M T   ++ +      R  P +  PEKRQRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   34 DTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 199          
BLAST of FC876708 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.268e-30
Identity = 87/197 (44.16%), Postives = 105/197 (53.30%), Query Frame = 2
Query:   74 DVCVQVSVPCSSLLDIVTVRCGHCSNLWSVNM--------------------------AAAF-QSLSWQDV---HHHQAP---SYASPECRIDL---------GSSSKC--NNKISAMRTPTNKATEERVVNRRESPHSTT------PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHF 514
            D  + VSVP SSL + VTVRCGHCS+L +VNM                          AA F  SL+       HHH      S A+   ++ L          S++ C  NN  +A   P    ++ +   +  SP + T      PEKRQRVPSAYN+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHF
Sbjct:   69 DTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHF 265          
The following BLAST results are available for this feature:
BLAST of FC876708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB5_ARATH1.725e-4768.71Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB6_ORYSJ2.187e-3452.94Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSJ2.187e-3448.59Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI2.187e-3448.59Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB2_ARATH7.035e-3354.48Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB4_ORYSJ9.188e-3346.89Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI9.188e-3346.89Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB2_ORYSJ5.955e-3254.11Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB3_ARATH1.123e-3047.59Axial regulator YABBY 3 OS=Arabidopsis thaliana GN... [more]
YAB3_ORYSJ3.268e-3044.16Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AB06RM1 EHR Citrus clementina cDNA clone KN0AAN3AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876708 ID=FC876708; Name=FC876708; organism=Citrus clementina; type=EST; length=515bp
GCACGAGGATTGGATTTTGATTTTATCAGATCAGGCGAGTCTCTGAAATT
AACTAGTTTGTAAATGATGATCTGATGTGTGTGTGCAGGTGAGTGTTCCT
TGCAGTAGCTTGCTTGACATCGTGACTGTCCGATGCGGGCACTGCTCCAA
TCTATGGTCCGTGAATATGGCAGCCGCTTTTCAGTCACTGTCATGGCAAG
ATGTTCATCATCATCAGGCTCCAAGTTACGCGTCACCCGAGTGCAGAATT
GATTTGGGTTCCTCGTCCAAATGCAACAACAAGATTTCAGCAATGCGAAC
ACCCACTAACAAGGCCACTGAGGAGAGGGTTGTGAATCGTCGTGAGTCAC
CACATAGTACTACTCCCGAGAAGAGGCAGCGAGTACCTTCTGCATACAAC
CAGTTTATAAAAGAGGAGATTCAGAGGATCAAGGCTAATAATCCAGATAT
CAGCCACAGGGAAGCATTCAGTACTGCCGCAAAGAATTGGGCACACTTCC
CTCACATCCATTTTG
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