FC876709

Overview
NameFC876709
Unique NameFC876709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10398 contig Ccv1_Contig10398:89..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876709 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.345e-37
Identity = 103/201 (51.24%), Postives = 122/201 (60.70%), Query Frame = -3
Query:  119 SCGQGAQIWDFNLGRLRGNEEFKQVEVAY---GASDSVFMIKNFNELMKETSLTNT----EIFGEMYPMNCPVTHGDMASFXXXXXNPTANQGPATSESNNLPIARPSSGSAFGKPKGSSSSKNIQFEQPFL---VRTT--AAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDAP 685
            S GQ +QIWDFNLG+ RG E+  +VE AY   GA+ S F I NF + M ET  TN     EI  + Y  +   T G +               P  SESNN PI        FG  KGS+SS ++ F +       +TT   A KA+LE LAQNRG+AMQRYKEK+KTRRYDK IRYESRKARADTR RV+GRFVKAS+AP
Sbjct:  256 SGGQSSQIWDFNLGQSRGPEDTSRVEAAYVGKGAASS-FTINNFVDHMNETCSTNVKGVKEIKKDDYKRS---TSGQVQ--------------PTKSESNNRPIT-------FGSEKGSNSSSDLHFTEHIAGTSCKTTRLVATKADLERLAQNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASEAP 431          
BLAST of FC876709 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.601e-34
Identity = 90/196 (45.92%), Postives = 108/196 (55.10%), Query Frame = -3
Query:  125 GMFWDG--HSCGQGAQIWDFNLGRLRGNEEFKQVEVAYGASDSVFMIKNFNELMKETSLTNTEIFGEMYPMNCPVTHGDMASFXXXXXNPTANQGPATSESNNLPIARPSSGSAFGKPKGSSSSKNIQFEQPFLVRTTAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASD 706
            GM W+   HS GQ  QIWDFNLG+ R  +E   VE       S F   N   L  +T  TN   F E Y     V             + T+ +G  TS+SNN+P A  S  S+     G   +++I        R  A   A+LE +AQNR NAMQRYKEKKKTRRYDK IRYE+RKARA+TR RVKGRFVKA+D
Sbjct:  224 GMQWNATNHSTGQNTQIWDFNLGQSRNPDEPSPVET----KGSTFTFNNVTHLKNDTRTTNMNAFKESYQQEDSV-------------HSTSTKGQETSKSNNIPAAIHSHKSS-NDSCGLHCTEHIAITSNRATRLVAVTNADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401          
BLAST of FC876709 vs. ExPASy Swiss-Prot
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  122 PATSESNNLPIARPSSGSAFGKPKGSSSSKNIQFEQPFLVRTTAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDA 427
            PA S  +   +   SS   F +  G+SSS  +  E P+   T     A    + +N  NA+ RYKEKKK R++DK +RY SRKARAD R+RVKGRFVKA +A
Sbjct:  262 PAHSNISFSGVTGESSAGDF-QECGASSSIQLSGEPPWYPPTLQDNNACSHSVTRN--NAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA 360          
BLAST of FC876709 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  125 TAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASD 301
            T+      E+ +  R +A+ RYKEKKK+RRY+KHIRYESRK RA++R R++GRF KA+D
Sbjct:  273 TSTRSMTHEINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAAD 331          
BLAST of FC876709 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  122 GSSSSKNIQFE-QPFLVRTTAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDA 355
            G+SS K +  E QP+   T     A+    A  R NA+ RYKEKKK R++DK +RY SRK RAD R+RVKGRFVK+ +A
Sbjct:  285 GASSMKQLSREPQPWCHPTAQDIIASSH--ATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEA 361          
BLAST of FC876709 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = -3
Query:  122 PFLVRTTAAAKANLELLA-QNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDA 319
            P  + + A  + N E+   Q R  A  RYKEKK  R + K IRY SRKARADTRKRVKGRFVKA D+
Sbjct:  286 PGFIMSEAPWETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDS 352          
The following BLAST results are available for this feature:
BLAST of FC876709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL15_ARATH7.345e-3751.24Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COL14_ARATH7.601e-3445.92Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL9_ARATH1.141e-1346.08Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis... [more]
COL13_ARATH9.660e-1355.93Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
COL10_ARATH1.648e-1251.90Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]
COL12_ARATH2.379e-1156.72Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3AB07RM1 EHR Citrus clementina cDNA clone KN0AAN3AB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876709 ID=FC876709; Name=FC876709; organism=Citrus clementina; type=EST; length=732bp
TTTTTTTTTTAATCAACAAATAAAGACTGCTGAATTATGCATTAACCGTA
GGAATGTCAGAGTTATATACAAAAGAGCAAGCAAGAAACATCTCTATCTC
AGCATGTGTTCAACCTTCAGGAGCATCACTAGCTTTAACAAATCGACCTT
TCACTCTCTTCCTAGTATCAGCTCTTGCCTTCCTTGACTCATACCGTATG
TGCTTGTCATATCTTCGGGTTTTCTTCTTCTCCTTGTAACGCTGCATGGC
ATTCCCTCGATTTTGTGCTAGCAGCTCCAGATTGGCCTTGGCTGCTGCAG
TTGTTCTCACAAGAAAAGGCTGTTCAAACTGGATATTTTTAGAGCTACTA
GAGCCTTTGGGCTTTCCAAAAGCTGAACCTGATGATGGCCTTGCTATCGG
TAGGTTGTTGCTCTCAGATGTTGCAGGCCCCTGATTGGCTGTTGGGTTAT
TTGAGTTATTATTAAATGATGCCATGTCACCATGTGTGACGGGACAATTC
ATCGGGTACATTTCTCCAAAAATTTCAGTATTAGTAAGGGATGTTTCTTT
CATCAGTTCATTGAAGTTCTTGATCATAAATACTGAATCACTTGCACCAT
ATGCAACTTCTACCTGTTTAAATTCTTCATTGCCCCTCAATCGTCCCAAA
TTAAAATCCCATATCTGAGCACCCTGACCACAAGAATGTCCATCCCAAAA
CATACCCTCGTCACCAACACGATCACACTCTT
back to top