FC876711

Overview
NameFC876711
Unique NameFC876711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876711_ssr25 microsatellite FC876711_ssr25:25..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10412 contig Ccv1_Contig10412:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876711 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 65/189 (34.39%), Postives = 80/189 (42.33%), Query Frame = 2 
Query:  122 ALEALNSPTTNTHNHHPFRYEDSWTKRRRSKRPRTDESPPLPPAVAAPTEEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKSFPTGQALGGHKR 652
            A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR                                              H CSIC K FPTGQALGGHKR
Sbjct:   23 AAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKR 180
The following BLAST results are available for this feature:
BLAST of FC876711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.814e-1834.39Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3AB11RM1 EHR Citrus clementina cDNA clone KN0AAN3AB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876711 ID=FC876711; Name=FC876711; organism=Citrus clementina; type=EST; length=654bp
TTTGAAATCACCTCTCTTCTCCTGCTCTCTCTCTCTCTCTCTCTCTCTCT
CGAAACTCAACAGATTCAACCACAAGAGTCGAGAATTCACCTACAAGAAA
AGAAAAAAATTCACGACTATGGCTCTAGAAGCTCTAAACTCTCCTACAAC
AAACACCCACAATCATCATCCGTTTAGATACGAAGACTCATGGACTAAAA
GAAGGCGCTCAAAACGACCCCGTACCGACGAGTCCCCACCACTGCCACCA
GCAGTAGCAGCTCCCACAGAAGAAGAGTACATGGCTCTCTGTCTCATCAT
GCTCGCCCGCGGTACCACCACCGCCAACACCGCTCCAGCCGAAAGAACCC
CATCCCTGGCGCCGGAACAGCGGCCGCAGGATCAGTTCCCGGAGCCGCCA
AGTTTGAAACTTTCTTACAAGTGCAGTGTGTGCAACAAGGCTTTCTCTTC
TTACCAGGCCCTTGGTGGGCACAAAGCCAGCCACCGCAAGAACGCTGCTG
ACGCCTCGGCTTCTCCCAACGCCGCAGCCGCCAGTGACGTCACCCCACCA
CCGTCAGCAACGGCGAGCAGCGGAAGCGGCGGTAGGACCCACGAGTGCTC
TATTTGTCACAAGTCTTTTCCCACTGGACAAGCTCTAGGAGGCCACAAGC
GGTG
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