FC876713

Overview
NameFC876713
Unique NameFC876713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876713_ssr599 microsatellite FC876713_ssr599:599..610. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig114 contig Ccv1_Contig114:50..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876713 vs. ExPASy Swiss-Prot
Match: AROK_ARATH (Shikimate kinase, chloroplastic OS=Arabidopsis thaliana GN=At2g21940 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.344e-35
Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 3
Query:   18 ESKALQKLSLVPQQVVSTGGGAVVRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSLLNLAACVGLKDVLNITPTTIAMEVLVQAQKYLNSK 413
            E+ AL+KLS   Q VVSTGGGAV+RP+NW++M +GI+++LDVPL+ALA RIAAVGTDSRPLL  +S D Y+ AF  LSA+  ER EAY NA+A VSL N+AA  G K+V ++TPT IA+E   Q   +L  +
Sbjct:  162 ETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 293          
BLAST of FC876713 vs. ExPASy Swiss-Prot
Match: AROK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 71/133 (53.38%), Postives = 93/133 (69.92%), Query Frame = 3
Query:   18 ESKALQKLSLVPQQVVSTGGGAVVRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSLLNLAACVGLKDVLNITPTTIAMEVLVQAQKYLNSKR 416
            E++ L KLSL+ + VVSTGGGAVVRP+NWR M +GI+V+LDVPL+ALA+RI   GT SRPLL  +S D Y      L+ L + R E YANA A VSL N+ A    KDV +ITP  I +EVL+Q + +L +++
Sbjct:  164 ETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASARVSLENI-ALKREKDVCHITPAEITLEVLIQIENFLKTQK 295          
BLAST of FC876713 vs. ExPASy Swiss-Prot
Match: AROK_MICAN (Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=aroK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 3
Query:    3 TRTEYESKALQKLSLVPQQVVSTGGGAVVRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSLLNLAACVGL-KDVLNITPTTI 368
            T  E E++ L +LS + + V++TGGG V++P+NW ++R G+ ++LDVPL+ L +R+      SRPLL     D      + L  L ++R   YA AD  + + +L     + + +L   PT I
Sbjct:   66 TFRELETQVLAELSSLTKTVIATGGGMVLKPMNWSYLRHGLMIWLDVPLEILVKRLKQ--DTSRPLLQSTDLD------SKLELLLEQRRGLYAEADLRIVVSDLDTPTDIVEKILTAIPTVI 180          
BLAST of FC876713 vs. ExPASy Swiss-Prot
Match: AROK_SYNP6 (Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   12 EYESKALQKLSLVPQQVVSTGGGAVVRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSL 308
            + E++ L++++   + VV+TGGG V+RP NW +++QG+ ++LDVP+  L RR+   G  +RPLL  ++        T L AL ++R + YA AD  +++
Sbjct:   66 QIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLE--GDQNRPLLQTEA------PATTLQALWEQRRDRYAQADLRIAI 156          
BLAST of FC876713 vs. ExPASy Swiss-Prot
Match: AROK_SYNE7 (Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=aroK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   12 EYESKALQKLSLVPQQVVSTGGGAVVRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSL 308
            + E++ L++++   + VV+TGGG V+RP NW +++QG+ ++LDVP+  L RR+   G  +RPLL  ++        T L AL ++R + YA AD  +++
Sbjct:   66 QIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLE--GDQNRPLLQTEA------PATTLQALWEQRRDRYAQADLRIAI 156          
The following BLAST results are available for this feature:
BLAST of FC876713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AROK_ARATH4.344e-3558.33Shikimate kinase, chloroplastic OS=Arabidopsis tha... [more]
AROK_SOLLC1.446e-3053.38Shikimate kinase, chloroplastic OS=Solanum lycoper... [more]
AROK_MICAN3.956e-1234.15Shikimate kinase OS=Microcystis aeruginosa (strain... [more]
AROK_SYNP65.167e-1236.36Shikimate kinase OS=Synechococcus sp. (strain ATCC... [more]
AROK_SYNE75.167e-1236.36Shikimate kinase OS=Synechococcus elongatus (strai... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BF02RM1 EHR Citrus clementina cDNA clone KN0AAN1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876713 ID=FC876713; Name=FC876713; organism=Citrus clementina; type=EST; length=661bp
GCACGAGGACAGAATATGAGAGCAAGGCACTGCAGAAATTGTCCTTGGTA
CCGCAACAAGTTGTATCCACAGGTGGTGGTGCAGTGGTTCGCCCACTCAA
CTGGAGATTTATGAGGCAGGGCATCACTGTCTTTCTCGATGTACCCCTGG
ATGCCTTGGCAAGGAGAATTGCCGCTGTTGGAACAGATTCTCGCCCTCTC
TTGGATTATGATTCAGCCGATTGTTATACAAAGGCATTTACGGCACTGTC
TGCTCTTTCAAAGGAGAGATCCGAGGCATATGCAAATGCTGATGCTACCG
TTTCTCTTCTCAATCTTGCAGCATGCGTTGGTCTCAAAGATGTACTAAAT
ATTACGCCCACCACCATAGCAATGGAGGTGCTTGTACAAGCTCAGAAATA
TCTAAATTCTAAACGGCGATAATGGCGGGTCCATTCAAATATTTTCTTAA
CAAAGCAAATTCATTGCCTATATTTACCTCTCTTTTCGGTAATGCGATCA
TCCAGTGAATTTGTTTTCATTTTTATCAAGGCTGCCAATGTTATACACGC
CGTGAGTAAAAATTTACAGGCCTTTCTTTTTGAATTGTTGTACACATGAA
ATAAATAAATTCAATCAAATGTCTTTTTTATACCATGATTATGGTAAGCT
TTAAGTAAAAA
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