FC876724

Overview
NameFC876724
Unique NameFC876724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10380 contig Ccv1_Contig10380:1..538. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876724 vs. ExPASy Swiss-Prot
Match: WAP53_MESAU (Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.523e-37
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV---TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D TLRI++LP    S        A +Q  Y   + V    EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA T
Sbjct:  158 NFLKGCKWAPDGSCILTNSADNTLRIYNLPPELYS--------ATEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFT 249          

HSP 2 Score: 83.9593 bits (206), Expect = 1.523e-37
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 536
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+
Sbjct:  252 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPS 324          
BLAST of FC876724 vs. ExPASy Swiss-Prot
Match: WAP53_MOUSE (Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.144e-36
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  154 NFLKGCKWAPDGSCILTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          

HSP 2 Score: 83.9593 bits (206), Expect = 2.144e-36
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 536
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPS 320          
BLAST of FC876724 vs. ExPASy Swiss-Prot
Match: WAP53_HUMAN (Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.636e-36
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NFLKG KW+PDGS  LT+S D  LRI++LP   + ++      A+        L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  168 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 261          

HSP 2 Score: 83.1889 bits (204), Expect = 3.636e-36
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 533
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP
Sbjct:  264 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSP 335          
BLAST of FC876724 vs. ExPASy Swiss-Prot
Match: WAP53_BOVIN (Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.637e-36
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS-----LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NFLKG KW+PDGS  LT+S D  LRI++LP            L  + +  E +     L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  159 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 252          

HSP 2 Score: 83.1889 bits (204), Expect = 3.637e-36
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 536
            LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT
Sbjct:  255 LRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPT 327          
BLAST of FC876724 vs. ExPASy Swiss-Prot
Match: WAP53_RAT (Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.638e-36
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D  LRI++LP      ++ + S   D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  154 NFLKGCKWAPDGSCILTNSADNVLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          

HSP 2 Score: 82.8037 bits (203), Expect = 3.638e-36
Identity = 38/73 (52.05%), Postives = 56/73 (76.71%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 533
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S +AFSP
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLAFSP 319          
The following BLAST results are available for this feature:
BLAST of FC876724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WAP53_MESAU1.523e-3746.00Telomerase Cajal body protein 1 OS=Mesocricetus au... [more]
WAP53_MOUSE2.144e-3643.30Telomerase Cajal body protein 1 OS=Mus musculus GN... [more]
WAP53_HUMAN3.636e-3642.42Telomerase Cajal body protein 1 OS=Homo sapiens GN... [more]
WAP53_BOVIN3.637e-3641.35Telomerase Cajal body protein 1 OS=Bos taurus GN=W... [more]
WAP53_RAT3.638e-3643.30Telomerase Cajal body protein 1 OS=Rattus norvegic... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3AC04RM1 EHR Citrus clementina cDNA clone KN0AAN3AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876724 ID=FC876724; Name=FC876724; organism=Citrus clementina; type=EST; length=538bp
GCACGAGGCTTCAATCCCTAACAATTTCCTCAAAGGCATCAAATGGTCGC
CGGATGGTTCAAGTTTCCTTACGAGTTCTGAAGACAAAACGCTTCGCATT
TTCTCATTGCCAGAAAATGGAATCAGCTATGACGTTAATGCCTGTTCTTT
GGCTAAAGATCAAGATTCTTATGAGGCAAGCCTTGTTGTGACGGAAGGAG
AGTCTGTTTATGACTTCTGTTGGTTCCCACACATGTCTGCTTCAGATCCA
ACTAGTTGTGTGTTTGCTTCCACCACTCGTGACCACCCAATTCATCTTTG
GGATGCTACTACTGTTACGTTGCACATACCGGGCTTATGATGCTGTAGAT
GAAATCACTGCTGCCTTTTCAGTTGCATTCAATCCCACTGGTACTAAGAT
ATTTGCTGGATACAACAAATCTGTCCGAGTATTTGATGTACACCGCCCTG
GTAGGGATTTTGAAAAGTATTCAACACTTAAGGGAAATAAAGAAGGCCAA
GCAGGTATAATGTCTGCAATTGCTTTCAGTCCAACCCA
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