FC876728

Overview
NameFC876728
Unique NameFC876728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.698e-35
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKA 361
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KA
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKA 99          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.647e-32
Identity = 70/100 (70.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFK 100          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFK 105          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P    QS+                LN+LFK  V+  K+  G DPKS++C F+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P    QS+                LN+LFK  V+  K+  G DPKS++C F+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P    QS+                LN+LFK  V+  K+  G DPKS++C F+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P    QS+                LN+LFK  V+  K+  G DPKS++C F+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.329e-12
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYK 110          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12
Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            MPPK+  +A+ A K+K   DKTFG+KNKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDPKS++C  +K
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFK 97          
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFK 110          
The following BLAST results are available for this feature:
BLAST of FC876728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
C3H21_ARATH5.698e-3572.73Zinc finger CCCH domain-containing protein 21 OS=A... [more]
C3H11_ORYSJ2.647e-3270.00Zinc finger CCCH domain-containing protein 11 OS=O... [more]
ZC3HF_DICDI3.594e-1344.76Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_RAT1.046e-1240.91Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE1.046e-1240.91Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN1.046e-1240.91Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN1.046e-1240.91Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR2.329e-1242.16Zinc finger CCCH domain-containing protein 15 OS=X... [more]
TMA46_YEAST5.190e-1236.73Translation machinery-associated protein 46 OS=Sac... [more]
ZC3HF_XENLA6.778e-1241.18Zinc finger CCCH domain-containing protein 15 OS=X... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AC08RM1 EHR Citrus clementina cDNA clone KN0AAN3AC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876728 ID=FC876728; Name=FC876728; organism=Citrus clementina; type=EST; length=362bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGG
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