FC876728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 5.698e-35 Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 2 Query: 65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKA 361 MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K LN+LFK+A+SQPKVPVGVDPKSILCEF+KA Sbjct: 1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKA 99
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 2.647e-32 Identity = 70/100 (70.00%), Postives = 78/100 (78.00%), Query Frame = 2 Query: 65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPK+ SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K LNDLFK+AVSQPKVPVGVDPKSI+CEF+K Sbjct: 1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFK 100
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13 Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = 2 Query: 65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPKQ QSK + K K+K VEDKTFGLKNKNKSK V YV ++ V Q K K + + Q KVP+GVDPKSI+CE++K Sbjct: 1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFK 105
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P QS+ LN+LFK V+ K+ G DPKS++C F+K Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P QS+ LN+LFK V+ K+ G DPKS++C F+K Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P QS+ LN+LFK V+ K+ G DPKS++C F+K Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P QS+ LN+LFK V+ K+ G DPKS++C F+K Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFK 109
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.329e-12 Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 2 Query: 71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 P+ K E KK+KI+EDKTFGLKNK +K QK+++N+ V Q P Q++ LNDLFK V+ KV G DPKS++C FYK Sbjct: 10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYK 110
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 5.190e-12 Identity = 36/98 (36.73%), Postives = 55/98 (56.12%), Query Frame = 2 Query: 65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 MPPK+ +A+ A K+K DKTFG+KNKN+S VQKY++ ++ PK ++ ++ LF V+ +V GVDPKS++C +K Sbjct: 1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFK 97
BLAST of FC876728 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12 Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 2 Query: 71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKP---DQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYK 358 P+ K E KK+KI+EDKTFGLKNK +K QK+++N+ V Q P Q++ LNDLFK V KV G DPKS++C F+K Sbjct: 10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFK 110 The following BLAST results are available for this feature:
BLAST of FC876728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876728 ID=FC876728; Name=FC876728; organism=Citrus clementina; type=EST; length=362bpback to top |