FC876730

Overview
NameFC876730
Unique NameFC876730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876730_ssr350 microsatellite FC876730_ssr350:350..369. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC876730 vs. ExPASy Swiss-Prot
Match: PPA16_ARATH (Probable inactive purple acid phosphatase 16 OS=Arabidopsis thaliana GN=PAP16 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.301e-32
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 3 
Query:    9 VKAVFVGHNHGLDWCCPYQN-LWLCFARHTGYGGYGNWPRGARILEITEQPFSLKSWIRMEDGSVNSEV 212
            VKAVFVGHNHGLDWCCPY++ LWLCFARHTGYGGYGNWPRG+RILEI+E PF +K+WIRMEDGSV+SEV
Sbjct:  294 VKAVFVGHNHGLDWCCPYKDKLWLCFARHTGYGGYGNWPRGSRILEISEMPFRIKTWIRMEDGSVHSEV 362
The following BLAST results are available for this feature:
BLAST of FC876730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPA16_ARATH4.301e-3285.51Probable inactive purple acid phosphatase 16 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3AC10RM1 EHR Citrus clementina cDNA clone KN0AAN3AC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876730 ID=FC876730; Name=FC876730; organism=Citrus clementina; type=EST; length=641bp
GCACGAGGGTCAAGGCAGTGTTTGTTGGACACAACCACGGATTGGACTGG
TGCTGCCCCTATCAAAATCTATGGCTCTGCTTTGCTAGACATACTGGTTA
TGGCGGCTACGGAAATTGGCCCAGAGGTGCTAGAATTCTGGAGATAACAG
AACAGCCGTTCTCTCTCAAGTCCTGGATAAGAATGGAAGATGGTTCTGTG
AATAGTGAAGTTATATTGAGTTCTTAACTTAAAACTCTCGTGCTTTGAAA
GTAAAATGCTCAATAAATAAGCAAACGTACGAGTGTTGTGCAATGTAAAA
CAATAAAATGATAATCTTCTTCATGCTTAAGTGATTGCTTGGACCCTGAA
TTTATTTATTTATTTATTTTTGGCTTTTTCACTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGCCCGGACCCCATTTC
CCCCAAAAGGGAGTCAAATAAAATTTCCCGGGCCGTCTTTTTAAAACGCC
GGGACGGGAAAAACCCGGGGTTTCCCCAATTTAACCCCTTTGCACCAATT
CCCCTTTTCCCCGGTGGGGGAAAAACCAAAAAGCCCCCCCC
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