FC876732

Overview
NameFC876732
Unique NameFC876732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:494..1263. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.056e-40
Identity = 113/263 (42.97%), Postives = 146/263 (55.51%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV--NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNXVKFLPMPYPEGSWEASLDAFLNGDNTQDGEN 762
            RQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+ EN
Sbjct:  132 RQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEEN 361          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.600e-38
Identity = 116/265 (43.77%), Postives = 136/265 (51.32%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV-----NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNXVKFLPMPYPEGSWEASLDAFLNGD--NTQD-GENLM 768
            RQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+L QN N         + N+  +EEK QV     NQ+G   S  D G  G++           YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M
Sbjct:  129 RQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSNI-------SFENMCFMEEKHQVSNNNNNQFGMTNSV-DAGCNGYQ-----------YFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPM 342          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.353e-36
Identity = 105/257 (40.86%), Postives = 138/257 (53.70%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADD-TPV---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNXVKFLPMPYPEGSWEASLDAFLNGDNTQD 753
            RQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   FN L N++   Y + +    KP V         PD+      PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD
Sbjct:  124 RQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANANAFVYPSANFTSNKPFVQ--------PDN-----MPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQD 346          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 53/130 (40.77%), Postives = 61/130 (46.92%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD---------ETPAAAPKS--------------SVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILE 321
            R+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P ++P+S              S    SQ S P  C+        QN +Y    D D    +S LE
Sbjct:   83 RKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLE 212          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 45/113 (39.82%), Postives = 59/113 (52.21%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-----AAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEE 324
            R+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E+       A     V+ N +  +  A +S    S   +F +  N+      +   LE+
Sbjct:   29 RRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLED 141          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 162
            RQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   54 RQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 44/118 (37.29%), Postives = 55/118 (46.61%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEK-PQVNQYGY 351
            RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+    A+  S+                         NY ++++Q YY+N     +  P  NQY Y
Sbjct:   96 RQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPP--------------------NYYSSNNQIYYSNPQTNPQTIPYFNQYYY 193          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.798e-13
Identity = 40/99 (40.40%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSV-----------KANSQKSVPKACLSPVQPSLNQN 264
            RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+
Sbjct:  189 RQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS 287          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.063e-12
Identity = 47/133 (35.34%), Postives = 63/133 (47.37%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANSQKSV-PKACLSPVQPS-LNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFP--DDGE 378
            RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAK+NFP+     P     S   ++ +  V P +   P+ P  L   + +  +   D   N+S+       +   + G  P  +DGE
Sbjct:   74 RQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSPPPPIAPDILLDQYGHFQSRSSDSSANLSMNMLSSSSSSLNHQGLRPNLEDGE 206          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYN 303
            RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+     +  +   +N    +    +    P+ NQ ++  ++ D   +N
Sbjct:   94 RQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERVQLGSNSTYYSSNQIPQMEPQSI----PNYNQYYHDASSGDMLSFN 190          
The following BLAST results are available for this feature:
BLAST of FC876732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RAP22_ARATH2.056e-4042.97Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH5.600e-3843.77Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ2.353e-3640.86Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH6.024e-1640.77Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF73_ARATH1.938e-1439.82Ethylene-responsive transcription factor ERF073 OS... [more]
ERF71_ARATH7.364e-1464.81Ethylene-responsive transcription factor ERF071 OS... [more]
EF115_ARATH1.256e-1337.29Ethylene-responsive transcription factor ERF115 OS... [more]
ABR1_ARATH2.798e-1340.40Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF112_ARATH1.063e-1235.34Ethylene-responsive transcription factor ERF112 OS... [more]
EF114_ARATH1.389e-1236.63Ethylene-responsive transcription factor ERF114 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AC12RM1 EHR Citrus clementina cDNA clone KN0AAN3AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876732 ID=FC876732; Name=FC876732; organism=Citrus clementina; type=EST; length=769bp
AGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAA
AGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTA
GGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTT
AACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAAGGC
AAACTCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGCCAA
GTTTGAACCAAAACTTCAATTACTTGAACAACTCCGATCAGGATTACTAC
AACAATGTGAGTATTCTGGAGGAGAAACCACAAGTGAATCAGTATGGATA
TATGGGCTCCTTCCCTGATGATGGAGAACTAGGATTCAAACCCTTTGTGC
CAACAGCTGATGATACTCCTGTGTACTTCAACTCTGACCAAGGCAGTAAC
TCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAAAGACTCC
TGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAATCTCAGT
TTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAACTCTGAG
AATGCTGTGCCTGTTCAGGATAACAATGGAAAGTCTCTGTCTGATGAGCT
TTTGGCTTTTGACAATCANGTGAAGTTCTTGCCAATGCCGTATCCTGAAG
GAAGCTGGGAGGCCTCCCTCGATGCCTTCCTCAATGGTGACAACACCCAG
GATGGTGAAAACTTGATGA
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