FC876735

Overview
NameFC876735
Unique NameFC876735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  146 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITQ 301
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAIT+
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  146 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITQ 301
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAIT+
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 2
Query:  131 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITQ 301
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ IT+
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.203e-18
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 2
Query:  143 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITQ 301
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y IT+
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 2
Query:  143 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITQ 301
            STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +T+
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:  131 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 295
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.123e-15
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 2
Query:  143 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  146 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:  146 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  152 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVI 54          
The following BLAST results are available for this feature:
BLAST of FC876735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LTI6B_ORYSJ6.378e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI6.378e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ2.424e-1977.19Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH1.203e-1875.47Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH2.052e-1873.58Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ2.123e-1571.43Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU2.123e-1566.67Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU2.347e-1468.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL2.347e-1468.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA6.393e-1264.71Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BG05RM1 EHR Citrus clementina cDNA clone KN0AAN1BG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876735 ID=FC876735; Name=FC876735; organism=Citrus clementina; type=EST; length=639bp
CCCCGGGCTGCACGTACAAATAACAAAAGCAATTACTCAAAACCTTAAAC
ACTTCTTTACTCCAAGTTCTTGCTTTTTGACTCCAAATTTTATTTTATTC
CATTTTACACTTTTTAAGAATCAATCAAAGATGGCAGATGGAAGCACAGC
AACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTCTTGGAGTCT
TTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGCTCTTGACC
ATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGCCATCACCCA
GAAGTGATCTCTCTTCTTCATCTGTACGTCCCTGTACTCTTTAATTTCCG
CACAGCTTTTGGAAATCTTTTTATAAACTTTTTTTTTAATTTATAACAAT
AAGAAATTGGTAATTTATTTACGATTTTACAGAACTTCTATATATTTACT
GAATTCGGGTCATCTCTCAAAAGCAATATAAAAAAAAATTGATTTTTTTA
AAAATAAATTTACGTTATAAATTTATTGATATCTATAATCTGAAATTTAT
TGTCTAAAAAACGTGACCCAGATTTAACCTCAACAAATAATTTATGAGGA
GTGCTACCGGTAAATATGATAATCTTTTTCTATTTTACA
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