FC876736

Overview
NameFC876736
Unique NameFC876736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876736 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  149 VPPLGVFRKLGCEADFWICLLLTILGYIPGIIYAVYAITK 268
            +PPLGVF K GC  +FWICLLLT LGYIPGIIYA+YAITK
Sbjct:   16 LPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of FC876736 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.112e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  149 VPPLGVFRKLGCEADFWICLLLTILGYIPGIIYAVYAITK 268
            +PPLGVF K GC  +FWICLLLT LGYIPGIIYA+YAITK
Sbjct:   16 LPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of FC876736 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  149 VPPLGVFRKLGCEADFWICLLLTILGYIPGIIYAVYAITK 268
            +PPLGVF + GC  +FWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:   15 LPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of FC876736 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  149 VPPLGVFRKLGCEADFWICLLLTILGYIPGIIYAVYAITK 268
            +PPLGVF K GC+ +FWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:   15 LPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of FC876736 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query:  149 VPPLGVFRKLGCEADFWICLLLTILGYIPGIIYAVYAITK 268
            +PPLGVF K GC  +FWICLLLT  GY+PGIIYAV+ ITK
Sbjct:   17 LPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
The following BLAST results are available for this feature:
BLAST of FC876736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LTI6B_ORYSJ9.112e-1380.00Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI9.112e-1380.00Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
RCI2A_ARATH7.713e-1270.00Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
RCI2B_ARATH1.316e-1167.50Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
LTI6A_ORYSJ3.828e-1172.50Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BG06RM1 EHR Citrus clementina cDNA clone KN0AAN1BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876736 ID=FC876736; Name=FC876736; organism=Citrus clementina; type=EST; length=610bp
CTCAAAACCTTATACACGACTTTACTCGGAGTTCTGGTTTGTTTCGACGC
TCAATTTTGTTTTAGACCGATTTACACTTTTTAAAAATCATCAAAGAGGG
CGAATGGAAGCACAGCACCTTGCGTAAAGAGTCTCGTGGCTGTTATCTGT
GCCTCCTCTTGGTGTCTTTCGCAAATTGGGTTGCGAGGCTGATTTTTGGA
TCTGTTTGCTCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCT
GTTTATGCCATCACCAAGAAGTGATCTCTCTTCTTCATCTGTAAGTCCCT
GTACTCTTTAATTTCCTCAAAGCTTTTGGAAATCTTTTTATAAACTTTTT
TTTTAATTTATAACAATAAGAAATTGGTAATTTATTTACGATTTTACAGA
ACTTCTATATATTTACTGAATTCGGGTCATCTCTCAAAAGCAATATAAAA
AAAAATTGATTTTTTTAAGAATAGAATTTAGGTTATAAATTTATTGATAT
CTATAATCTGAAATTTATTGTCTAAAAAACGTGACCCAGATTTAACCTCA
ACAAATAATTTACGAGGAGTGCTACCGGTAAATATGAAAATCTTTTTCTA
TTTTACATAA
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