FC876737

Overview
NameFC876737
Unique NameFC876737
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6884 contig Ccv1_Contig6884:85..566. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876737 vs. ExPASy Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  256 IYSSKLIQALNHV-------NGASPSAPRRGRAVRQAADRVLAVAAKGRTRWSPAIFTHILKLKFTTHNNVNRVSAPSS 471
            IYS+KL+ AL  +       + +S S PR GRAVR+ ADR LAVAA+G+T WS AI +  +KLKF  H    R+S P++
Sbjct:   58 IYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR-QRISNPTT 135          
BLAST of FC876737 vs. ExPASy Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.737e-11
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  256 IYSSKLIQALNHVN-------GASPSAPRRGRAVRQAADRVLAVAAKGRTRWSPAIFTHILKLKF 429
            IYS+KL QAL  V         +SP+A +RG+AVR+AADR LAV+A+GRT WS AI  + +KLKF
Sbjct:   56 IYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKF 120          
The following BLAST results are available for this feature:
BLAST of FC876737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH147_ARATH2.191e-1148.10Transcription factor bHLH147 OS=Arabidopsis thalia... [more]
BH148_ARATH3.737e-1155.38Transcription factor bHLH148 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BG08RM1 EHR Citrus clementina cDNA clone KN0AAN1BG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876737 ID=FC876737; Name=FC876737; organism=Citrus clementina; type=EST; length=482bp
TGTCTCCACTCAACCAAACGACGTCATTTCACCCACCCCGTTCCGTTTTC
GTTCCTGATCTCCTTTTTTATTTCTCTCAAAGGTCAGCACTTGGAATATT
TCCGAATATTATCCACCAAAACGATGTCTTCAACTCTGATATCGAACCCG
GTAACCAACTCTGATCGCTCTAACAGGAAAAACAAAAACAAGGCCTCACA
ATCAACAGAGTCCAAGCAAAACCAAACCCAATGGAAATCACAAACTCAAC
AACAAATCTACTCCTCAAAACTCATCCAAGCTTTAAACCACGTCAACGGC
GCGTCTCCTTCAGCTCCGCGCCGAGGGCGAGCAGTCCGGCAGGCGGCTGA
CCGCGTGCTAGCCGTGGCGGCCAAAGGGAGGACCCGGTGGAGTCCAGCCA
TTTTCACTCACATACTCAAGCTCAAGTTTACAACACATAATAATGTGAAT
AGAGTATCGGCTCCTTCATCAGCCGCTGCGGC
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