FC876739

Overview
NameFC876739
Unique NameFC876739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:14..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876739 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:  479 LADLKNEASVLSSDGSLAIHAGERLCRGIVTDAITTPVVNTSAYFFKKTAELIDFEEKRRAGFEYGRY 682
            L D K+  S LSSDGSL +HAGERL RGIVTDAITTPVVNTSAYFFKKTAELIDF+EKR   FEYGRY
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRY 229
The following BLAST results are available for this feature:
BLAST of FC876739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.559e-2280.88Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BG10RM1 EHR Citrus clementina cDNA clone KN0AAN1BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876739 ID=FC876739; Name=FC876739; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGTTCTTATCATAAAATACAGAGAGAGCAAAGCCGCCGTTCAAT
ACGACGTCATAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCC
TTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTC
GGGCTCGGCTCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCG
GAGCGTCAACGGCGTCGTTTAGCGGCCTGTCGTCTCTGATTTTCGGGTTT
CCGCCGAACTTCGTGCGCCAGCTTAACACGAAGGCCAGGAGGAACTGCAG
CAACATCGGCGTGGCGCAAATCGTGGCGGCTTCATGGTCAAACGGTGTGG
GTTCCGGCTCTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCC
CCGCCCGTCCCCGTCGAGATTACGAGCGGCGATGACGTCGCGCTTGTTGA
CGGATTGAAAAATGTACATCTGGAGGCCCTCGCTGATTTGAAAAACGAGG
CTTCGGTTTTGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTGAAAGA
TTATGTCGTGGTATAGTAACAGATGCAATTACTACCCCAGTGGTGAATAC
TTCTGCTTACTTCTTTAAGAAAACTGCGGAGCTTATTGATTTCGAGGAGA
AACGTCGTGCGGGTTTTGAATATGGGAGGTATG
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