FC876740

Overview
NameFC876740
Unique NameFC876740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10397 contig Ccv1_Contig10397:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.663e-53
Identity = 107/208 (51.44%), Postives = 141/208 (67.79%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MAE  VKLLG+W SPF+ RV+WALK+KGV Y+Y+EE+  NKS LLL+ NPVYKK+PVL+HNGKP+ ES++I+EYIDE ++   +LP+DPY+RA ARFWAKF DDK V  V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +G W  + EE     L+ +   P  + W + ++    +   +P   ELL
Sbjct:    1 MAE--VKLLGFWYSPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELL 205          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.171e-53
Identity = 108/208 (51.92%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MAE  VKLLG+W SPF  RV+WALKLKGV Y+Y+EE+  NKS LLL+ NPV+KK+PVL+HNGKP+ ES++I+EYIDE ++   +LP+DPY+RA ARFW+KF  DK V  V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +G W  + EE   V L+ +   P  + W + ++    +K  +PS  ELL
Sbjct:    1 MAE--VKLLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELL 205          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.704e-53
Identity = 107/208 (51.44%), Postives = 141/208 (67.79%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MAE  VKLLG+W SPF+ RV+WALK+KGV Y+Y+EE+  NKS LLL+ NP++KK+PVL+HNGK + ES++I+EYIDE ++   +LP+DPY+RA ARFWAKF DDK VP V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +  W  + EE + V L+ +   P    W   ++    IK  +P   ELL
Sbjct:    1 MAE--VKLLGFWYSPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDK-VPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELL 205          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.407e-52
Identity = 105/201 (52.24%), Postives = 135/201 (67.16%), Query Frame = 1
Query:   58 EESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKCVPEV-MGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIP 654
            +E VKLLG   SPF  RV+ ALKLKGV Y+++EENL NKS LLL+YNPV+KK+PV VHN +P+AESL+I+EYIDE WK NP+LP DPY+RA ARFW+KF DDK V  V    F    +E+EK   +  E L+ LE  L+ K FFGG++ G +DIA  +I  W  I +EIA + L  +   P+L  W   FL  P +   +P
Sbjct:    5 QEDVKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLP 205          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.966e-47
Identity = 103/218 (47.25%), Postives = 134/218 (61.47%), Query Frame = 1
Query:   52 MAE-ESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKC--VPEVMGAFASKGEEQEKAAKARENLKMLERALEGKPFFGGDKIGFLDIAV----------GWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHE 666
            MAE E VKLLG WASPF+ RV+ ALKLKG+ Y+YVEE L NKSPLLL  NP++KK+PVLVHNGK + ES +I+EYIDE W QNP+LP+DPYER+ ARF+AK  D++   V  +  A A +   +  A + RE +  LE+ L GK +FGG  +GFLD             GW GI   ++ E            P    W+ N  +V ++K C+P   E
Sbjct:    1 MAEKEEVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPFCLERGWEGIGLEVITEE---------KFPEFKRWVRNLEKVEIVKDCVPPREE 209          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.836e-47
Identity = 99/191 (51.83%), Postives = 135/191 (70.68%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNF 621
            MAE  VKLLG   SPF+ RV+WALK+KGV Y+++EE+L NKSPLLL+ NP++KKIPVL+HNGK + ES++I+EYIDEA++   +LP+DPY+RA ARFWAK+ +DK    V  +F SKGEEQEKA  +A E LK+L+   + K  F GDK GF DI      ++  I+EE++ + L  +   P   AW + +
Sbjct:    1 MAE--VKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDKGA-AVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEY 188          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 95/208 (45.67%), Postives = 125/208 (60.10%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQN-PLLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEKAAKA-RENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHEL 669
            M   +V LL +W S F +R++ AL LKG+ Y+  EENL +KSPLLL  NPV+KKIP+L+HN K + ESL I+EYIDE W    PLLP DPYER+ ARFWA + D K        ++ KGE+QE+A K   E LK LE  L  K +FGGD +GF+D+A+     W    E  A  S I+A   P L  W    +E   +   +P  H++
Sbjct:    1 MESNNVVLLDFWPSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFS-IEA-ECPKLVVWAKTCMESESVSKSLPHPHKI 206          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42
Identity = 94/208 (45.19%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   67 VKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWK-----QNPLLPEDPYERANARFWAKFFDDKCVPEVMG-AFASKGEEQEKAAKAR--ENLKMLERAL----EGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIP 654
            +KLLG W+SP+A+RV+  L LK + Y+YVEENL +KS LLL  NPV+K +PVL+H G+P+ ES +I++YIDE W      +  ++P DPYERA ARFWA + DDK  P  +   F SK EE+  AA A+    L+ LE A     +GKPFFGGD +GF+D+ +G    W   ++++    LID    P L AW   F      K  +P
Sbjct:    7 LKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVP 214          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.842e-42
Identity = 94/210 (44.76%), Postives = 125/210 (59.52%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNP--LLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MA E V LL +W S F +R++ AL  K + Y+Y EE+L NKSPLLL+ NP++KKIPVL+HNGKP+ ES++ +EYI+E WK     LLP DPY+RA ARFWA + D K        + +KGEEQE A K   E LK+LE AL  KP+FGG+  GF+DIA+     W    E     S       P   AW    ++   +   +P   ++L
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFS--TEAECPKFVAWAKRCMQRESVAKSLPDQPKVL 208          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.017e-42
Identity = 93/210 (44.29%), Postives = 126/210 (60.00%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQN--PLLPEDPYERANARFWAKFFDDKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIARVSLIDA*TMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MA E V LL +W S F +R++ AL  K + Y+Y +E+L NKSPLLL+ NP++KKIPVL+HNGKP+ ES++ +EYI+E WK     LLP DPY+RA ARFWA + D K        +A+KGEEQE A K   E LK+LE AL  +P+FGG+  GF+DIA+     W    E     S       P   AW    ++   +   +P   ++L
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFS--TEAECPKFVAWAKRCMQRESVAKSLPDQPKVL 208          
The following BLAST results are available for this feature:
BLAST of FC876740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GSTX2_TOBAC1.663e-5351.44Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC2.171e-5351.92Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC3.704e-5351.44Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN1.407e-5252.24Probable glutathione S-transferase OS=Glycine max ... [more]
GSTXA_ARATH3.966e-4747.25Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_SOLTU8.836e-4751.83Probable glutathione S-transferase OS=Solanum tube... [more]
GSTXA_TOBAC1.320e-4245.67Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTU6_ORYSJ1.724e-4245.19Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX4_TOBAC3.842e-4244.76Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC5.017e-4244.29Probable glutathione S-transferase parC OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1BG11RM1 EHR Citrus clementina cDNA clone KN0AAN1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876740 ID=FC876740; Name=FC876740; organism=Citrus clementina; type=EST; length=672bp
GCACGAGGCATTTAGATATTATCACGCGCTGCTTTTGCTTGGCGAGCAAT
AATGGCTGAAGAAAGTGTGAAGTTGCTGGGTTACTGGGCAAGCCCCTTTG
CTCTTAGAGTTAAGTGGGCGCTCAAACTGAAGGGAGTTCACTACCAATAT
GTTGAAGAGAATCTCCCCAACAAGAGTCCCTTGCTGTTGCGATACAATCC
GGTTTATAAGAAGATTCCAGTTCTTGTACACAATGGGAAACCATTGGCAG
AATCACTACTGATCATCGAATACATTGATGAAGCGTGGAAACAAAATCCT
CTCCTCCCAGAAGATCCTTACGAACGGGCCAATGCACGTTTCTGGGCAAA
ATTCTTTGATGACAAGTGTGTACCTGAAGTCATGGGAGCATTTGCCTCAA
AAGGGGAGGAACAAGAGAAAGCTGCAAAAGCTCGAGAGAATCTGAAGATG
CTGGAAAGGGCTCTGGAGGGGAAGCCCTTTTTTGGTGGTGACAAGATAGG
CTTTCTGGACATTGCTGTGGGGTGGATTGGAATCTGGGGTCGAATTGTTG
AGGAAATTGCACGTGTCAGCCTGATTGATGCATAGACGATGCCTTTGCTT
ACTGCTTGGTTGAACAATTTTCTTGAAGTTCCTGTTATCAAAGCATGCAT
ACCATCTTGGCACGAATTGCTT
back to top