FC876741

Overview
NameFC876741
Unique NameFC876741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10408 contig Ccv1_Contig10408:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGN-KRDEARRE 667
            PPASK  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH+ CI  WLG   SCP+CR+++P +  +    K+++ARR+
Sbjct:   53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKARRQ 141          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDEARRE 667
            PPA+KA VE++P   +  S+ E    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++    +K+D+ARR+
Sbjct:   64 PPAAKAVVESLPRTVIRSSKAEL---KCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDEARR 664
            PPA+K  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH++CI  WLG   SCP+CR+++P +  E    + E  R
Sbjct:   53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKER 139          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDEARRE 667
            PPA+KA VE++P   +  ++ +    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++    +K+D+ARR+
Sbjct:   64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDEARRE 667
            PPA+K +VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH+NCI  WL    SCP+CR+++P +++    +KRD+AR++
Sbjct:   52 PPAAKTAVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQ 138          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKR 649
            I+  +  E LL+N          G+ G PPA+K+++EA+ + +V  SE E +   C VC +   +GE  +++PC H +H +CI  WLG + SCPVCR+++  ++ E   +R
Sbjct:  203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVM-VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEER 312          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDEARRE 667
            PPA+K  VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH++CI  WL    SCP+CRY++P +++    ++RD+AR++
Sbjct:   52 PPAAKTVVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRRDKARKQ 138          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC E+Y +GE  R++PC H FH +CI  WL    SCPVCR
Sbjct:  187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 38/107 (35.51%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGK---DGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDEA 658
            G + L+ ++   +G+    G PPA K  + ++P++ V + E+  +G EC VC E+Y V E  R++PC H FH++CI  WL +  +CPVCR  +  E+    ++  EA
Sbjct:  181 GQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQ-EQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEA 286          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGN-KRDEARR 664
            L   L QG+ +  G+  L    +        PPA+KA V+++P + +   + +  G +C VCL E+E  E  REMPCKH FH  CI  WL    SCP+CR ++P +  +    K+D+ RR
Sbjct:   27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERR 140          
The following BLAST results are available for this feature:
BLAST of FC876741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RN181_XENLA2.237e-1643.33E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN181_RAT2.237e-1644.44E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_XENTR2.922e-1642.05E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_MOUSE3.817e-1642.22E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN3.817e-1644.44E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
CIP8_ARATH8.502e-1635.14E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_HUMAN1.894e-1543.33E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
RN126_MOUSE2.474e-1544.83RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN115_HUMAN3.231e-1535.51RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_DANRE4.220e-1536.67E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AD01RM1 EHR Citrus clementina cDNA clone KN0AAN3AD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876741 ID=FC876741; Name=FC876741; organism=Citrus clementina; type=EST; length=691bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTTT
CATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTGT
TTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGAG
ATGAAGCGAGGAGAGAAATTTGGGTTAGTTTTTCAATCAGT
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