FC876804

Overview
NameFC876804
Unique NameFC876804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14035 contig Ccv1_Contig14035:233..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876804 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 3
Query:   60 SSTTIISKCTVRP---DQKSRIKPLRLSVSDLPMLSCQYIQKGVLLTAPPFSITHFVSLLRQSLSVALSHFPALAGRFST-----DSDGHISILCNDTGVDFIHAKATFLSVNSLLSPI-DVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVP 614
            +  T IS   VRP   +Q+ R K + L+  DL +L   Y Q+G+L   P    THF+S LR SLS AL  +   AGR +      D      I C+ +G  FIHA +  +SV+ LL P   VPD F+ F+  +   S  G   PL A+QVTE+ DGVF+G   NH V DG S W+FF T+++I    ++ +  P
Sbjct:    2 ADVTFISSSIVRPQIINQEGREK-IHLTPFDLNLLYVDYTQRGLLFPKPDPE-THFISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICSNGQRENLQP 193          
BLAST of FC876804 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 76/213 (35.68%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   72 IISKCTVRPDQKSR-IKPLRLSVSDLPMLSCQYIQKGVL--------LTAPPFSITHFVSLLRQSLSVALSHFPALAGRFSTDSDG--HISILCNDT---GVDFIHAKATFLSVNSLLSPIDVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPA 668
            I+SK  V+P +     K   L+  DLP L+  Y QK +L        L  P F     V  L+  L + L  F  LAG+ + D +G   +     D+   GV+F  A A  ++V+ L +  D    FKE   ++  ++  G  RPL AVQVT+L DG+ +G   NHAV DGTS WHF +++AEI +GA+ IS  P   R    D+   L   A
Sbjct:    5 IMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQ-NEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAE-DGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKLDLTA 215          
The following BLAST results are available for this feature:
BLAST of FC876804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3028_ARATH2.750e-2539.18Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
DCR_ARATH3.146e-2135.68BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CA03RM1 EHR Citrus clementina cDNA clone KN0AAN1CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876804 ID=FC876804; Name=FC876804; organism=Citrus clementina; type=EST; length=708bp
GCACGAGGTCATTCATAGATATTGGTTGAAGGGAATAAAAGCAAGCAAAC
ATGCCTTCTTCTTCAACCACAATCATCTCCAAATGCACAGTGCGCCCCGA
TCAAAAATCAAGAATCAAGCCTCTCAGACTCTCTGTTTCAGACCTCCCCA
TGCTCTCTTGCCAGTACATTCAAAAAGGCGTCCTCCTCACGGCCCCTCCA
TTTTCAATCACCCATTTCGTTTCATTGCTCAGGCAATCACTTTCGGTCGC
TCTTTCCCACTTCCCCGCCCTCGCCGGCCGCTTCTCCACCGACTCCGACG
GCCACATCAGCATCCTCTGCAACGATACGGGCGTCGACTTCATTCACGCC
AAGGCCACTTTCCTTTCCGTCAACAGCCTCCTCTCGCCCATCGACGTCCC
CGATTCTTTCAAGGAGTTCTTCGCTTTTGACAGAACCATCAGCTACACCG
GCCATGTCAGGCCCTTAGCCGCCGTCCAAGTGACGGAGCTAGCTGACGGC
GTCTTCGTCGGTTGTACGGTCAATCACGCCGTCACTGACGGTACCTCCTT
TTGGCACTTCTTTAATACATTCGCCGAAATCACTAAAGGCGCCAAGAAAA
TCTCGAAAGTTCCCGACTTCTCCCGCGACACCGTTTTTGACTCGCCGGCG
GTGCTCAAGTTCCCCGCCGGTGGCCCCGCTGTTACTTTCTCCGGCGCGGT
GCCGTTGC
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