FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ARATH (3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 2.645e-97
Identity = 165/199 (82.91%), Postives = 184/199 (92.46%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            T  Y+E++TS+P+EPVYSD  ASF+++YRFD+SKLEP+VAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDF+AAAK+F A+G+KVKVPTFLVPATQKVWMDVY LPVP +GGKTC+QIFEEAGCDTPASP+CGACLGGP DTYAR+NEP VCVSTTNRNFPG MGHKEG IYLASPYTAA SALT  V DP+EFL
Sbjct:  310 TLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKLEPVVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKLFHAAGRKVKVPTFLVPATQKVWMDVYALPVPGAGGKTCAQIFEEAGCDTPASPSCGACLGGPADTYARLNEPQVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGRVADPREFL 508          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_METMA (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina mazei GN=leuC1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.414e-35
Identity = 90/199 (45.23%), Postives = 116/199 (58.29%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E TF +L+++   PYEPVYSD  AS+L E+ +D   +EP VA PH  DN     E +   +D+V+IG+CT G+ ED   AA V    GKKV V T ++PA++       TL      G    +I  +AG  T A+P CG CLG        + E  VCVST NRNF G MG K+G IYLASP TAA SALT  + DP++
Sbjct:  207 EKTFDFLKNRAVAPYEPVYSDPDASYLKEFVYDAGDIEPQVACPHQVDNVKPVGEVEGTHVDQVFIGTCTNGRLEDLEVAASVL--KGKKVTVRTIIIPASRS------TLLAAIKNG--TMEILLKAGV-TLATPGCGPCLGAHQGV---LGEGEVCVSTANRNFKGRMG-KDGFIYLASPATAAASALTGEITDPRK 390          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_HALOH (3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.063e-33
Identity = 80/201 (39.80%), Postives = 108/201 (53.73%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            E TFKYLE++    Y P YSD+ A +     +D+S +EP VA PH P+N     E  D+KID+  IGSCT G+ ED   AA +         V   ++P TQ ++             +   +IF EAG    ++PTCG CLGG     AR  +    ++TTNRNF G MGH E  +YLA+P  AA SA+  Y+  P+E L
Sbjct:  232 EKTFKYLENRAQRDYTPCYSDDDAEYEKVIEYDVSDIEPQVAFPHLPENTRPISEEGDIKIDQAVIGSCTNGRMEDLRIAAGILKEKQVHHDVRCIVIPGTQDIYKQALK--------EGLIEIFIEAGA-AVSTPTCGPCLGGHMGILARGEK---AIATTNRNFVGRMGHPESEVYLANPAVAAASAIKGYIAHPEEVL 420          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_METAC (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina acetivorans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.669e-32
Identity = 85/198 (42.93%), Postives = 113/198 (57.07%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            E TF++L+++ +  YEPVY+D  A +L E+ +D   +EP VA PH  DN     E +   +D+V+IG+CT G+ ED   AA V    GK+V V T ++PA++       TL      G    +   +AG  T A+P CG CLG        + E  VCVST NRNF G MG K G IYLASP TAA SALT  + DP+
Sbjct:  240 EKTFEFLKNRAAATYEPVYADPDAVYLEEFTYDADDIEPQVACPHQVDNVKPVGEVEGTHVDQVFIGTCTNGRLEDLEVAAAVL--KGKQVAVRTIVIPASRT------TLLAAIENG--TMETLLKAGV-TLATPGCGPCLGAHQGV---LGEGEVCVSTANRNFKGRMG-KGGFIYLASPATAAASALTGEITDPR 422          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CLOTH (3-isopropylmalate dehydratase large subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=leuC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.302e-31
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T +Y+++ ++  Y+   +DE A +++ Y  D+S+++P VA PH P N        ++KID+V IGSCT G+ ED   AA+V    G+KV   V   ++PATQK+W             +    IF +AG    ++PTCG CLGG     A+       V+TTNRNF G MGH E  IYLASP  AA SA+   +  P E
Sbjct:  232 EKTIEYVKEHSTRQYKVYKADEDAEYVATYEIDLSQVKPTVAFPHLPSNTRTIDNVGNIKIDQVVIGSCTNGRIEDLRVAAEVL--KGRKVHKDVRCIIIPATQKIWKQAM--------NEGLFDIFIDAGA-AVSTPTCGPCLGGHMGILAKGER---AVATTNRNFVGRMGHPESEIYLASPAVAAASAVLGRIGSPDE 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_METKA (3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri GN=leuC1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.302e-31
Identity = 79/201 (39.30%), Postives = 108/201 (53.73%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            E T +Y++ +      PV  D  A + +E   D+S LEP VAKP SPDN     E + + ID+V+IGSCT G+ ED   AA+V         V   ++PA+++V+       V         ++  EAG      P CG CLGG     A   E   CV+T+NRNFPG MGH+E  +YLASP TAA SA+   + DP+ +L
Sbjct:  230 EKTLEYVKKRAGTEGRPVEPDPDARYEAELTLDVSDLEPQVAKPFSPDNVVPVGEVEGIAIDQVFIGSCTNGRYEDLKVAAEVLEGEEVHDDVRLIVIPASREVYHRTLKDGV--------LEVLHEAGA-LICPPNCGPCLGGHMGVLA---EGERCVATSNRNFPGRMGHRESEVYLASPATAAASAIEGEITDPRPYL 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CLOK5 (3-isopropylmalate dehydratase large subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.339e-31
Identity = 76/199 (38.19%), Postives = 107/199 (53.77%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T +Y+++ ++  Y    +DE A ++     D+SK+ P VA PH P+N     E  ++KID+V IGSCT G+  D   AAKV         V T + PATQ +++            +   +IF E+G    ++PTCG CLGG     A+       V+TTNRNF G MGH E  +YLASP  AA SA+T  +  P+E
Sbjct:  232 EKTIEYVKEHSNRSYTVYEADEDAEYVKTIEIDLSKIPPTVAFPHIPENTRTIDEVGEIKIDQVVIGSCTNGRIGDLRVAAKVLKGRKVNSNVRTIIFPATQSIYLQAMK--------EGLLEIFIESGA-VVSTPTCGPCLGGHMGILAKGER---AVATTNRNFTGRMGHVESEVYLASPAVAAASAVTGKISSPEE 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_AQUAE (3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus GN=leuC PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.757e-30
Identity = 80/204 (39.22%), Postives = 108/204 (52.94%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF---LASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T +Y++ +   P++   SD  A + S Y +D S++EPLVA P+ P N     E   + ID+ +IGSCT G+ ED   AAKVF   L  GKKV   V   ++PA++ ++             +    IF EAGC    S TCG CLGG     A   E   C+ST+NRNFPG MGH +   YLA+P   A SA+   +  P E
Sbjct:  231 EKTIEYVKQRAKRPWKVYQSDPDAEYHSVYEWDASQIEPLVAWPYLPSNVHPVSESTHITIDQAFIGSCTNGRIEDLRVAAKVFEAALKQGKKVHPYVRCIVIPASKAIYKQALK--------EGLIDIFMEAGCVVSTS-TCGPCLGGHMGVLA---EGERCISTSNRNFPGRMGHPKSESYLANPAVVAASAIMGRIAHPDE 422          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CALS8 (3-isopropylmalate dehydratase large subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=leuC PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.212e-30
Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T +Y++  ++ PY+   +DE A +   Y  DISK+ P VA PH P+N     E  + + ID+V IGSCT G+ ED   AAK+    G+KVK  +   + PATQ ++             +   +IF +AGC   ++PTCG CLGG     A   E    ++TTNRNF G MGH    +YL+SP  AA SA+  Y+  P+E
Sbjct:  234 EKTIEYVKQHSTKPYKIFKADEDAEYSEVYEIDISKIRPTVAFPHLPENTKTIDEITEKIYIDQVVIGSCTNGRIEDLRIAAKIL--KGRKVKKGLRCIIFPATQNIYKQALK--------EGLIEIFIDAGC-VVSTPTCGPCLGGHMGILA---EGERALATTNRNFVGRMGHPNSEVYLSSPAIAAASAVLGYIGSPEE 421          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_HYDS0 (3-isopropylmalate dehydratase large subunit OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=leuC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 76/201 (37.81%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPT--FLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T +Y+E +   PY+   SD+ A ++  Y +D S +EP+VA P+ P N     E   + ID+ +IGSCT G+ ED   AA +    GKKV   T   ++PA++ V++            +    IF EAGC    S TCG CLGG     A+      C+ST+NRNFPG MGH +   YLA+P   A SA+   +  P+E
Sbjct:  231 EKTIEYVEKRAKKPYKIYQSDKDAHYVEVYEWDASSIEPMVAWPYLPSNVHPVSESTHITIDQAFIGSCTNGRIEDLRIAASIL--KGKKVHPYTRCVVIPASKNVYLQAL--------HEGLVDIFIEAGCAVSTS-TCGPCLGGHMGILAKGER---CISTSNRNFPGRMGHPQSEAYLANPAVVAASAVLGRIAHPEE 417          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_ARATH2.645e-9782.913-isopropylmalate dehydratase OS=Arabidopsis thali... [more]
LEUC1_METMA6.414e-3545.233-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_HALOH2.063e-3339.803-isopropylmalate dehydratase large subunit OS=Hal... [more]
LEUC1_METAC8.669e-3242.933-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_CLOTH4.302e-3139.303-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC1_METKA4.302e-3139.303-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_CLOK57.339e-3138.193-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_AQUAE4.757e-3039.223-isopropylmalate dehydratase large subunit OS=Aqu... [more]
LEUC_CALS86.212e-3039.113-isopropylmalate dehydratase large subunit OS=Cal... [more]
LEUC_HYDS01.808e-2937.813-isopropylmalate dehydratase large subunit OS=Hyd... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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