FC876821

Overview
NameFC876821
Unique NameFC876821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length248
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGRAASF++IPSSTGAAKAVGKVLPAL G LTG+SF VPT DVS+V+L VRLEKE TYE++K
Sbjct:  184 TATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIK 261          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPSM DWRGGRAASF++IPSSTGAAKAVGKVLPAL G LTG+SF VPT DVS+V+L VRLEK  TY+E+K
Sbjct:  186 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIK 263          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.299e-28
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGRAASF++IPSSTGAAKAVGKVLPAL G LTG++F VPT DVS+V+L VRLEKE TY+E+K
Sbjct:  184 TATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEATYDEIK 261          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.922e-28
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPSM DWRGGRAASF++IPSSTGAAKAVGKVLP L G LTG+SF VPT DVS+V+L VRLEK  TY+E+K
Sbjct:  186 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIK 263          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.122e-28
Identity = 61/78 (78.21%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGRAASF++IPSSTGAAKAVGKVLPAL G LTG+SF VPT DVS+V+L VRLEK  TY+E+K
Sbjct:  185 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIK 262          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.122e-28
Identity = 60/78 (76.92%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPSM DWRGGRAASF++IPSSTGAAKAVGKVLP+L G LTG+SF VPT DVS+V+L VR+EK  TYE++K
Sbjct:  184 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPATYEQVK 261          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.689e-28
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPSM DWRGGRAASF++IPSSTGAAKAVGKVLPAL G LTG++F VPT DVS+V+L  RLEK  TY+E+K
Sbjct:  183 TATRKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIK 260          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.737e-28
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPSM DWRGGRA SF++IPSSTGAAKAVGKVLPAL G LTG++F VPT DVS+V+L VRLEKE +Y+++K
Sbjct:  173 TATQKTVDGPSMKDWRGGRATSFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEASYDDIK 250          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.141e-27
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGRAASF++IPSSTGAAKAVGKVLP L G LTG+SF VPT DVS+V+L VRLEK  TY+E+K
Sbjct:  184 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTVDVSVVDLTVRLEKSATYDEIK 261          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.141e-27
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPSM DWRGGRAASF++IPSSTGAAKAVGKVLPAL G LTG++F VPT DVS+V+L VR+EK  +YE++K
Sbjct:  184 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTCDVSVVDLTVRIEKAASYEQIK 261          
The following BLAST results are available for this feature:
BLAST of FC876821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
G3P_ATRNU1.032e-2879.49Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_ARATH1.032e-2879.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY2.299e-2878.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL3.922e-2878.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA5.122e-2878.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA5.122e-2876.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR6.689e-2876.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC8.737e-2875.64Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.141e-2776.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.141e-2775.64Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC09RM1 EHR Citrus clementina cDNA clone KN0AAN1CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876821 ID=FC876821; Name=FC876821; organism=Citrus clementina; type=EST; length=248bp
GCACGAGGCACTGCCACTCACAAGACTGTTGATGGACCATCAATGAACGA
CTGGAGAGGTGGCAGAGCTGCTTCCTTCGACCTCATTCCCAGCAGCACCG
GTGCTGCCAAGGCAGTTGGTAAGGTTTTGCCTGCCCTTGCTGGTACATTG
ACCGGACTGTCCTTCCCAGTTCCTACCGGTGATGTCTCAATGGTCAACCT
CCCTGTCCGACTTGAAAAGGAGACGACTTATGAGGAACTTAAAAATGC
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