FC876856

Overview
NameFC876856
Unique NameFC876856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.656e-91
Identity = 172/261 (65.90%), Postives = 199/261 (76.25%), Query Frame = 2
Query:   11 VPGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXX-VYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            VPG   WMLGVS VP++I F+LMLFMPESPRWLFM + + +AI VL++ YDI+RLEDEIDHLS+A +EE ++ +TV YLDVF SKE+R                 I TVMYYSPTIVQMAGF SN LAL LSL VA  NA GT+VGIY IDH GRKKLALSSL GVIISL++LS +F           +YGW+A++GLALYI FFAPGMGPVPWT+NSE+YP+QYRGICGGMSATVN ISNLIVA TFLT+AE  GTG  F
Sbjct:  186 VPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTF 446          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.481e-33
Identity = 78/180 (43.33%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   11 VPGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRK---NKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 541
            V G   WMLG++ +P+++ FVLM  +PESPRWL+    +E+A  +L +IY    +E EI  L  + + E+ +   ++ +  + +  +K +R                 I TVMYYSPTIVQ+AGF SN  ALLLSL  AG NA G+I+ IY ID  GRKKL + SL GVIISL +L+  F
Sbjct:  183 VTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVF 362          

HSP 2 Score: 103.99 bits (258), Expect = 9.959e-22
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 2
Query:  575 YGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +GW AL+GL LYI FF+PGMG VPW +NSE+YP ++RGICGG++AT N ISNLIVA +FL++ E +GT   F
Sbjct:  452 FGWFALLGLGLYIIFFSPGMGTVPWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTF 523          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.411e-29
Identity = 77/249 (30.92%), Postives = 124/249 (49.80%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            WMLG++AVPS++L + +LFMPESPRWLF   ++ KA  +L K+     ++ EI  +  A  ++    K +          +R                   T++YY+P      GF  N  ++L ++ +   N + T+V I +ID  GRK L L   AG++ISL++L+   +            W  +I L ++I  FA   GPV W +  E++P   RGI  G+S  +  +  LIV+ T+  + E +G
Sbjct:  163 WMLGLAAVPSLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKEL------FDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-GNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLA---LVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIG 401          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.121e-28
Identity = 71/184 (38.59%), Postives = 103/184 (55.98%), Query Frame = 2
Query:   14 PGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISK--------EIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 541
            PG   WMLGV+ VP+I+ FVLML +PESPRWL+      ++  +L +IY    +E E++ L  + + E  K    I  D F +K         +R                 I TVMYYSP+IVQ AG+ SN  A+ LSL  +G NA+G+IV +  +D +GR+KL + S+ G+I  L++L+  F
Sbjct:  183 PGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEMEALKLSVEAE--KADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSPSIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILATVF 364          

HSP 2 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  575 YGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +G++A++ L LYI  +APGMG VPW +NSE+YP +YRG+ GG++A  N +SNLIV+ +FL++   +G+   F
Sbjct:  456 FGFLAIVFLGLYIVVYAPGMGTVPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTF 527          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.215e-27
Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = 2
Query:   14 PGLCIWMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSA-----ADEELRKNKTVIYLDVFISKEI-RXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAF 541
            PG   WMLGVSA+P+II F LML +PESPRWL+    + ++  +L +IY    +E EI  L  +     ADE++  +     L   +S  + R                 I TVMYYSPTI+Q AG+ SN  A+ L+L  +G NAVG++V +  +D +GR+KL + S+ G+I  LV+L+  F
Sbjct:  182 PGTWRWMLGVSAIPAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVF 363          

HSP 2 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  575 YGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +G++A++ L LYI  +APGMG VPW +NSE+YP +YRG+ GG++A  N +SNL+V+ TFLT+   VG+   F
Sbjct:  455 FGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTF 526          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.215e-27
Identity = 78/249 (31.33%), Postives = 123/249 (49.40%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            WM+G++AVP+++L + + FMPESPRWL     +E+A  +++  +D   +E E+  +      E  K +T   L V  +K IR                 I TV+YY+PTI   AG  ++  A L ++ +   N +  I  + LID  GRKKL +    G+ +SL  LS   +            W+ ++ L +YI F+    GPV W L  E++P + RG   G +  V   +NLIV+  F  +   +G
Sbjct:  164 WMVGLAAVPAVLLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPKDIEMELAEMKQG---EAEKKETT--LGVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASA-LGTMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSAST---AWMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMG 403          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR1_LEIDO (Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26
Identity = 71/253 (28.06%), Postives = 127/253 (50.20%), Query Frame = 2
Query:   35 LGVSAVPSII-LFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +G+ A+P+++  F L+ F+PESPRWL      ++A  V  K         E+D       +EL   +  I     +++++R                 I T+MYYS  I+  AGF+   + ++LS+ +A  NA+ T V I+ +D FGR+++ L S+ G ++ LV+++             V G + L  LA+++A +APG+G +PW +  E++P   R     ++   N  +N++V+  F  +   +G G  F
Sbjct:  167 IGIGALPAVVQAFCLLFFLPESPRWLLSKGHADRAKAVADKF--------EVDLCEFQEGDELPSVR--IDYRPLMARDMRFRVVLSSGLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTRISYSVGGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTF 409          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.800e-24
Identity = 78/269 (29.00%), Postives = 130/269 (48.33%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYD-----IARLEDEIDHLSSAAD------EELRKNK--TVIYLDVFI--SKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLAL-YIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            MLG+ AVPS+IL + +L MPESPRWL M      A  VL K  D       RLED        AD      +  R+N     ++ ++ I  +  +R                 I  V+ +SP I + AG +++H  LL ++AV        +V  +L+D  GR+ L L+S+ G+++SL  L  +           ++  +  I   + Y+A F+ G GP+ W  +SE++P + R     M   VN +++ +++ +FL +++ + TG  F
Sbjct:  197 MLGIGAVPSVILAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMTTGGAF 465          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: XYLT_LACBR (D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.657e-24
Identity = 77/256 (30.08%), Postives = 129/256 (50.39%), Query Frame = 2
Query:   29 WMLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKI--YDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            WMLG +A+P+ +LF+  L +PESPR+L  +   ++A  VL  +  +D   +  EI+ +  +A     K  +  + ++F  K +R                   TV+YY+PTI    GF  +  ALL  + +   N + T + + ++D   RKK+      G+ ISL ++S   I             I++I L +YIAFF+   GPV W +  EV+P   RG+    ++ +N  +N+IV+ TF ++ +  GTG+ F
Sbjct:  164 WMLGFAAIPAALLFLGGLILPESPRFLVKSGHLDEARHVLDTMNKHDQVAVNKEINDIQESA-----KIVSGGWSELF-GKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVS-AALLAHIGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMS---IGMKFSGGSQTAAIISVIALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGSLF 409          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.147e-24
Identity = 75/253 (29.64%), Postives = 121/253 (47.83%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            M GV+ +PS++L + M F PESPRWL       +A   +  +Y   R+ + +  LS++            + D+F S+  +                 I  V+YYS ++ + AG QS+  A   S  V  +N  GT V   L+D  GRK L L+S  G+ +S++LLS +F            G +A++G  LY+  F+ G GPVP  L  E++  + R     +S  ++ ISN ++   FL+V    G  + +
Sbjct:  266 MFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAG--WFDLFSSRYWKVVSVGAALFLFQQLAG-INAVVYYSTSVFRSAGIQSDVAA---SALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFTWKALAAYS---GTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVY 509          
The following BLAST results are available for this feature:
BLAST of FC876856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
INT1_ARATH2.656e-9165.90Probable inositol transporter 1 OS=Arabidopsis tha... [more]
INT2_ARATH1.481e-3343.33Probable inositol transporter 2 OS=Arabidopsis tha... [more]
YWTG_BACSU8.411e-2930.92Putative metabolite transport protein ywtG OS=Baci... [more]
INT4_ARATH7.121e-2838.59Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH1.215e-2739.56Probable inositol transporter 3 OS=Arabidopsis tha... [more]
CSBC_BACSU1.215e-2731.33Probable metabolite transport protein csbC OS=Baci... [more]
GTR1_LEIDO1.754e-2628.06Membrane transporter D1 OS=Leishmania donovani PE=... [more]
PLT5_ARATH2.800e-2429.00Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
XYLT_LACBR3.657e-2430.08D-xylose-proton symporter OS=Lactobacillus brevis ... [more]
PLST4_ARATH8.147e-2429.64Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1CF01RM1 EHR Citrus clementina cDNA clone KN0AAN1CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876856 ID=FC876856; Name=FC876856; organism=Citrus clementina; type=EST; length=792bp
TGCACGAGGGGTCCCCGGACTATGCATATGGATGCTTGGAGTATCAGCTG
TGCCATCTATCATTCTTTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCT
AGATGGCTTTTCATGACCAGTGACCAAGAAAAAGCCATTTTGGTTCTTTC
TAAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAT
CTGCTGCAGATGAAGAACTCCGAAAAAATAAAACTGTCATATACTTGGAT
GTTTTTATATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACT
TCAGGCATTTCAGCAGTTCACTGGTATCACCACAGTCATGTACTACAGCC
CGACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCACCTAGCGCTTCTC
CTATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAAT
TTATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAG
CTGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGA
TCATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCACTCATCGGGTT
AGCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGA
CTCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGT
ATGTCAGCTACTGTGAACTGCATCTCAAATTTGATCGTGGCCCCCACCTT
CCTGACGGTTGCTGAACTAGTGGGCACTGGAGCCCCTTTCTT
back to top