FC876857

Overview
NameFC876857
Unique NameFC876857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876857_ssr599 microsatellite FC876857_ssr599:599..610. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig114 contig Ccv1_Contig114:50..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876857 vs. ExPASy Swiss-Prot
Match: AROK_ARATH (Shikimate kinase, chloroplastic OS=Arabidopsis thaliana GN=At2g21940 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28
Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 3 
Query:    9 REYESKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSLLNLAACVGLKDVLHITPTTIPMEVLVQAQKYLNSK 413
            R  E+ AL+KLS               RP+NW++M +GI+++LDVPL+ALA RIAAVGTDSRPLL  +S D Y+ AF  LSA+  ER EAY NA+A VSL N+AA  G K+V  +TPT I +E   Q   +L  +
Sbjct:  159 RGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 293
[Close]
BLAST of FC876857 vs. ExPASy Swiss-Prot
Match: AROK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.423e-25
Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = 3 
Query:    9 REYESKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLDVPLDALARRIAAVGTDSRPLLDYDSADCYTKAFTALSALSKERSEAYANADATVSLLNLAACVGLKDVLHITPTTIPMEVLVQAQKYLNSKR 416
            R+ E++ L KLSL              RP+NWR M +GI+V+LDVPL+ALA+RI   GT SRPLL  +S D Y      L+ L + R E YANA A VSL N+ A    KDV HITP  I +EVL+Q + +L +++
Sbjct:  161 RDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASARVSLENI-ALKREKDVCHITPAEITLEVLIQIENFLKTQK 295
The following BLAST results are available for this feature:
BLAST of FC876857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AROK_ARATH8.938e-2849.63Shikimate kinase, chloroplastic OS=Arabidopsis tha... [more]
AROK_SOLLC5.423e-2546.32Shikimate kinase, chloroplastic OS=Solanum lycoper... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CF02RM1 EHR Citrus clementina cDNA clone KN0AAN1CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876857 ID=FC876857; Name=FC876857; organism=Citrus clementina; type=EST; length=667bp
GCACGAGGAGAGAATATGAGAGCAAGGCACTGCAGAAATTGTCCTTGGTA
CCGCAACAAGTTGTAGCCACAGGTGGTGGTGCAGTGGTTCGCCCACTCAA
CTGGAGATTTATGAGGCAGGGCATCACTGTCTTTCTCGATGTACCCCTGG
ATGCCTTGGCAAGGAGAATTGCCGCTGTTGGAACAGATTCTCGCCCTCTC
TTGGATTATGATTCAGCCGATTGTTATACAAAGGCATTTACGGCACTGTC
TGCTCTTTCAAAGGAGAGATCCGAGGCATATGCAAATGCTGATGCTACCG
TTTCTCTTCTCAATCTTGCAGCATGCGTTGGTCTCAAAGATGTACTACAT
ATTACGCCCACCACCATACCAATGGAGGTGCTTGTACAAGCTCAGAAATA
TCTAAATTCTAAACGGCGATAATGGCGGGTCCATTCAAATATTTTCTTAA
CAAAGCAAATTCATTGCCTATATTTACCTCTCTTTTCGGTAATGCGATCA
TCCAGTGAATTTGTTTTCATTTTTATCAAGGCTGCCAATGTTATACACGC
CGTGAGTAAAAATTTACAGGCCTTTCTTTTTGAATTGTTGTACACATGAA
ATAAATAAATTCAATCAAATGTCTTTTTTATACCATGATTATGGTAAGCT
TTAAATAAAAAAAAAAA
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