FC876860

Overview
NameFC876860
Unique NameFC876860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig664 contig Ccv1_Contig664:636..1406. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876860 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.844e-12
Identity = 67/245 (27.35%), Postives = 114/245 (46.53%), Query Frame = 3 
Query:   27 VPQGYKGLRRLKSLDLSEFEIRDGSKLLQSMGSFPSLNTLVLTDNNFTDIATATQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKTLSMFGCEVNGLVRGQGFPHFKSLEHLDMDYTRIA----------LNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCSLVHLQVLYIYNNDLRGSLPWCLANMTSLRLLDVSSNQLTGSISSSPLIHLTSIEELMLSNNHF--QIPISL 725
            +P  Y GL+RLK + L+   +  G KL   +G    L  + +  N+F        E    +NL+Y  +   SL  SL Q + +L  +L+TL +F     G +  + + + KSL+ LD    +++           N ++L +I  ++                    + +G+  L  L  L+++NN+  G LP  L +   L  +DVS+N  TG+I SS L H   + +L+L +N F  ++P SL
Sbjct:  193 IPAAYGGLQRLKFIHLAGNVL--GGKLPPRLGLLTELQHMEIGYNHFN--GNIPSEFALLSNLKYFDVSNCSLSGSLPQELGNL-SNLETLFLFQNGFTGEIP-ESYSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGE-----------------VPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSS-LCHGNKLYKLILFSNMFEGELPKSL 413
The following BLAST results are available for this feature:
BLAST of FC876860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5148_ARATH6.844e-1227.35Probable leucine-rich repeat receptor-like protein... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CF07RM1 EHR Citrus clementina cDNA clone KN0AAN1CF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876860 ID=FC876860; Name=FC876860; organism=Citrus clementina; type=EST; length=768bp
GCACGAGGGAAATCGACAATCTTGTGGTTCCTCAAGGTTACAAAGGTTTG
AGGAGGCTGAAAAGTCTTGATCTATCGGAATTTGAAATTAGAGATGGAAG
CAAGTTGTTACAGTCAATGGGATCATTCCCATCCCTCAACACACTTGTCC
TGACGGATAATAATTTTACCGATATAGCGACCGCTACTCAAGAGTTGCAC
AATTTCACCAACTTGGAATATTTGACATTGGACGAATCCTCTCTCCATAT
AAGCCTTCTGCAAAGCATTGCATCATTATTCCCTTCGTTAAAAACTCTGT
CGATGTTTGGTTGTGAAGTCAACGGTCTCGTACGCGGTCAAGGTTTTCCC
CATTTCAAGAGTTTGGAACATTTGGATATGGATTACACGCGCATTGCACT
CAACACCAGCTTTCTTCAAATCATCGGTGAATCGATGCCTTCTCTTAAGT
ACTTATCACTGTCATATTCTAATCTTAGCACTAACAGCAGCAGGATTCTT
GATCAAGGCCTCTGTTCGTTGGTGCATCTGCAAGTGTTGTACATTTATAA
TAATGATCTGAGAGGCAGCTTGCCTTGGTGCTTGGCAAATATGACATCCC
TCCGATTATTAGATGTTTCTTCCAATCAACTTACTGGAAGCATCTCCTCA
TCTCCCCTCATTCATTTGACATCCATTGAAGAGCTGATGCTTTCAAACAA
TCACTTCCAGATCCCAATTTCACTTGAACCACTTTTCAATCACTCAAGAC
TCAAGATTTTCAATGCTT
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