FC876861

Overview
NameFC876861
Unique NameFC876861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10430 contig Ccv1_Contig10430:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB8C_ARATH (ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 3.076e-62
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = -2
Query:  323 DDEIWKALEKCQRKTIISSLRNKLDSS-VSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAEYWSSCRRNS 745
            DDEIWKALEKCQ KT IS+L NKLDSS VSDEGENWS GQRQL CLGRVLLKRN+ILVLDEA ASIDSATDAI+QRIIR+EF++CTVITVAHRVPTVIDSDMVMVLS+G L+EY+EPSK+MET+S FSKLVAEYW+SCR NS
Sbjct: 1148 DDEIWKALEKCQLKTTISNLPNKLDSSEVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMETDSYFSKLVAEYWASCRGNS 1289          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB14C_ARATH (ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.298e-44
Identity = 82/133 (61.65%), Postives = 109/133 (81.95%), Query Frame = -2
Query:  347 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAEY 745
            D+EIWK+LE+CQ K +++S   KLDS V+D GENWS GQRQLLCLGRV+LKR+RIL LDEA AS+DS TDA++Q+IIR++FS+CT+I++AHR+PTV+D D V+V+  GK  EYD P +++E  S F+ LV EY
Sbjct: 1400 DEEIWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQSLFAALVQEY 1532          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB4C_ARATH (ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.449e-43
Identity = 78/133 (58.65%), Postives = 109/133 (81.95%), Query Frame = -2
Query:  347 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSSFSKLVAEY 745
            D+EIWK+LE+CQ K ++++   KLDS V D GENWS GQRQLLCLGRV+LKR+R+L LDEA AS+DS TDA++Q+IIR++F++CT+I++AHR+PTV+D D V+V+  GK  E+D P++++E  S F+ LV EY
Sbjct: 1377 DEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLERPSLFAALVQEY 1509          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB10C_ARATH (ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.449e-43
Identity = 84/136 (61.76%), Postives = 107/136 (78.68%), Query Frame = -2
Query:  341 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVM-ETNSSFSKLVAEYWS 745
            D EIW+ L KCQ K ++    N LDS V ++G NWS GQRQL CLGR +L+R+R+LVLDEA ASID+ATD ILQ+ IR+EF++CTVITVAHR+PTV+D  MV+ +S G+++EYDEP K+M + NS F KLV EYWS
Sbjct: 1246 DAEIWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWS 1381          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB3C_ARATH (ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.177e-43
Identity = 85/136 (62.50%), Postives = 112/136 (82.35%), Query Frame = -2
Query:  341 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVME-TNSSFSKLVAEYWS 745
            DD+IW+AL+KCQ    +     KLDSSVS+ G+NWS GQRQL+CLGRVLLKR++ILVLDEA AS+D+ATD ++Q+ +R+ FS+CTVIT+AHR+ +VIDSDMV++LS G + EYD P +++E  +SSFSKLVAEY S
Sbjct: 1372 DDQIWEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTS 1507          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB7C_ARATH (ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.536e-42
Identity = 82/137 (59.85%), Postives = 110/137 (80.29%), Query Frame = -2
Query:  338 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVME-TNSSFSKLVAEYWSS 745
            DD+IW+AL+KCQ    I     KLDS VS+ G+NWS GQRQL+CLGRVLLKR+++L+LDEA AS+D+ATD ++Q  +RQ FS CTVIT+AHR+ +VIDSDMV++L  G + E+D P++++E  +SSFSKLVAEY +S
Sbjct: 1344 DDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTAS 1480          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB15C_ARATH (Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.669e-41
Identity = 82/143 (57.34%), Postives = 112/143 (78.32%), Query Frame = -2
Query:  320 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS-FSKLVAEYWSSCRRNSY 745
            D EIW+AL+KCQ   +I +   KLD++V + GENWS GQRQL+CLGRVLLK++ ILVLDEA AS+DSATD ++Q+II QEF + TV+T+AHR+ TVI+SD+V+VLS G++ E+D P+K+++   S FSKL+ EY  S R N +
Sbjct:  889 DREIWEALDKCQLGDVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY--SLRSNHF 1029          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB9C_ARATH (ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.940e-40
Identity = 80/143 (55.94%), Postives = 112/143 (78.32%), Query Frame = -2
Query:  320 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS-FSKLVAEYWSSCRRNSY 745
            D EIW+A++KCQ   +I +   +LD++V + GENWS GQRQL+CLGRVLLK++ ILVLDEA AS+DSATD ++Q+II QEF + TV+T+AHR+ TVI+SD+V+VLS G++ E+D P+K+++   S FSKL+ EY  S R N +
Sbjct: 1342 DHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY--SLRSNHF 1482          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB6C_ARATH (ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.534e-40
Identity = 80/142 (56.34%), Postives = 108/142 (76.06%), Query Frame = -2
Query:  323 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS-FSKLVAEYWSSCRRNS 745
            DD+IW+AL+ CQ    +     KLDS VS+ G+NWS GQRQL+CLGRVLLKR+++LVLDEA ASID+ATD ++Q  +R  F++CTVIT+AHR+ +VIDSDMV++L  G + E+D P++++E  SS FSK VAEY +S    S
Sbjct: 1322 DDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKFVAEYTTSSESKS 1463          
BLAST of FC876861 vs. ExPASy Swiss-Prot
Match: AB5C_ARATH (ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 8.152e-39
Identity = 79/136 (58.09%), Postives = 106/136 (77.94%), Query Frame = -2
Query:  341 DDEIWKALEKCQRKTIISSLRNKLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKVMETNSS-FSKLVAEYWS 745
            DD+IW+AL+K Q   ++     KLDS V + G+NWS GQRQL+ LGR LLK+ +ILVLDEA AS+D+ATD ++Q+IIR EF +CTV T+AHR+PTVIDSD+V+VLS G++ E+D P++++E  SS F KLV EY S
Sbjct: 1371 DDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPARLLEDKSSMFLKLVTEYSS 1506          
The following BLAST results are available for this feature:
BLAST of FC876861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
AB8C_ARATH3.076e-6284.51ABC transporter C family member 8 OS=Arabidopsis t... [more]
AB14C_ARATH1.298e-4461.65ABC transporter C family member 14 OS=Arabidopsis ... [more]
AB4C_ARATH2.449e-4358.65ABC transporter C family member 4 OS=Arabidopsis t... [more]
AB10C_ARATH2.449e-4361.76ABC transporter C family member 10 OS=Arabidopsis ... [more]
AB3C_ARATH4.177e-4362.50ABC transporter C family member 3 OS=Arabidopsis t... [more]
AB7C_ARATH3.536e-4259.85ABC transporter C family member 7 OS=Arabidopsis t... [more]
AB15C_ARATH6.669e-4157.34Putative ABC transporter C family member 15 OS=Ara... [more]
AB9C_ARATH1.940e-4055.94ABC transporter C family member 9 OS=Arabidopsis t... [more]
AB6C_ARATH2.534e-4056.34ABC transporter C family member 6 OS=Arabidopsis t... [more]
AB5C_ARATH8.152e-3958.09ABC transporter C family member 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF08RM1 EHR Citrus clementina cDNA clone KN0AAN1CF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876861 ID=FC876861; Name=FC876861; organism=Citrus clementina; type=EST; length=746bp
GATAAACTGAAAACTTTTTATTATTGAATCAATGTATTTTACACACTTAT
ATCACGAGTATCCATTCCTTGTATAATAAACTGTTACACATGCACGTAGT
AATTCTTAAACCAATATAACAGATTGAGCCACGTCACCTAACTATAACAA
ACTGAACCACGTCAGCTTACGGAGCTAATCTGCTACAGTCCAACACACAG
TAACAATCATGTGCTCGCTTCCTCTGTTTCATCACAATTAACCAGTTTCA
CTAACAGTGGGACCCGTTCATGCAGAATTTCGGTTGTTGAGCTCATTACT
GAAAGTTATTCAAATTCTGGTAGGAATTTCTCCTGCAACTTGACCAGTAC
TCTGCTACAAGCTTGGAAAAGGAGGAATTAGTTTCCATAACCTTTGATGG
TTCATCATACTCCAACAATTTTCCATATGAGAGCACCATGACCATGTCAC
TATCAATAACAGTTGGTACTCTATGAGCTACCGTTATCACTGTGCAGTTG
GAGAATTCCTGCCTGATAATTCTCTGTAGAATAGCATCTGTTGCGGAATC
AATGGAAGCGTTAGCTTCATCCAGAACTAGAATTCTATTTCTCTTTAGGA
GGACTCTTCCAAGGCACAAGAGTTGGCGTTGCCCCGCGCTCCAATTTTCA
CCTTCATCACTCACAGATGAGTCCAGCTTATTGCGCAGGCTGCTGATAAT
TGTCTTACGCTGACACTTCTCCAGAGCCTTCCATATTTCATCATCT
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