FC876863

Overview
NameFC876863
Unique NameFC876863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876863_ssr456 microsatellite FC876863_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10417 contig Ccv1_Contig10417:6..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 4.677e-91
Identity = 161/210 (76.67%), Postives = 175/210 (83.33%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKQTMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIKSHMTAL 688
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQRKGEKIDIY+DKRD +TMEDWDQETLEKVV SK  EYQQNKPTDI CKYFL+ V+KK YGWF VCPNGG +CHYRHALPP YV+KS M AL
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKAL 210          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 3.032e-90
Identity = 159/209 (76.08%), Postives = 174/209 (83.25%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKQ-TMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIKSHMTAL 688
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKGEKIDIYSD RD+   M++WDQETLEKVVESK  EY QNKPTDI CKYFL+ V+KK YGWF  CPNGG ECHYRHALPP YV+KS M AL
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWFWSCPNGGKECHYRHALPPGYVLKSQMKAL 209          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.784e-49
Identity = 104/219 (47.49%), Postives = 137/219 (62.56%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNKP-TDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T I C++FLE ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLK 218          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.784e-49
Identity = 104/219 (47.49%), Postives = 137/219 (62.56%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNKP-TDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T I C++FLE ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLK 218          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.784e-49
Identity = 105/219 (47.95%), Postives = 137/219 (62.56%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNKP-TDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T I CK+FLE ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLK 218          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.784e-49
Identity = 105/219 (47.95%), Postives = 137/219 (62.56%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNKP-TDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T I CK+FLE ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLK 218          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.554e-49
Identity = 104/211 (49.29%), Postives = 133/211 (63.03%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNKP-TDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK GQC KG KCKFSHDL+++RK EK  +Y D RD    K TME+WD++ LE+VV  K+ E ++ KP T I CK+FLE ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELEKDTMENWDEKKLEEVVNKKHGEAEKIKPKTQIVCKFFLEAIENNKYGWFWVCPGGGDMCMYRHALPPGFVLK 219          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.395e-48
Identity = 103/219 (47.03%), Postives = 136/219 (62.10%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNKP-TDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T I CKYFL+ ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLK 219          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.425e-47
Identity = 102/211 (48.34%), Postives = 131/211 (62.09%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KQTMEDWDQETLEKVVESKNKEYQQNK-PTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K TME+WD++ LE+VV  K+ E ++ K  T I CK+FLE ++   YGWF VCP GG  C YRHALPP +V+K
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEKIKAKTQIVCKFFLEAIENNKYGWFWVCPGGGDTCMYRHALPPGFVLK 219          
BLAST of FC876863 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.174e-47
Identity = 103/211 (48.82%), Postives = 129/211 (61.14%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-DKQTMEDWDQETLEKVVESKNKEYQQNKPTDIDCKYFLEPVDKKHYGWF*VCPNGGIECHYRHALPPEYVIK 670
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K G  C KG +CKF+HDL   RK EKIDIY+D+R D+ TME+WD+  L+ VVE K     + KPT I CK+FL+ ++ K YGWF  CPNGG +C Y+H LP  Y +K
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKKRTTENKAKPTAIICKFFLDAIESKKYGWFWECPNGGEKCAYQHCLPEGYQLK 211          
The following BLAST results are available for this feature:
BLAST of FC876863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
C3H11_ORYSJ4.677e-9176.67Zinc finger CCCH domain-containing protein 11 OS=O... [more]
C3H21_ARATH3.032e-9076.08Zinc finger CCCH domain-containing protein 21 OS=A... [more]
ZC3HF_RAT5.784e-4947.49Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE5.784e-4947.49Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN5.784e-4947.95Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN5.784e-4947.95Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR7.554e-4949.29Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_CHICK6.395e-4847.03Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_XENLA1.425e-4748.34Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_DICDI3.174e-4748.82Zinc finger CCCH domain-containing protein 15 homo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF10RM1 EHR Citrus clementina cDNA clone KN0AAN1CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876863 ID=FC876863; Name=FC876863; organism=Citrus clementina; type=EST; length=690bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAACAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAAG
TTGTGGAATCAAAGAATAAAGAATACCAGCAGAACAAACCTACAGATATT
GATTGTAAATACTTTTTAGAACCTGTGGATAAGAAACATTATGGCTGGTT
TTGAGTCTGCCCAAATGGTGGTATAGAGTGCCATTACAGGCACGCTCTTC
CTCCTGAATATGTTATAAAATCACATATGACGGCTCTGTT
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