FC876873

Overview
NameFC876873
Unique NameFC876873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876873_ssr86 microsatellite FC876873_ssr86:86..100. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876873_ssr111 microsatellite FC876873_ssr111:111..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7054 contig Ccv1_Contig7054:591..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876873 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.943e-26
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 1 
Query:  244 ITREPEPGMSPYILEVPGGNDVVETISNFCRRKNIGICVLTGSGTVANVTLRQPSATPGS---------TITFHGRFDILSISATFLPQNAAYPPLPNIFAISLAGPQGQIVGGSVVGPRLXXXXXXXXXXXXNNPSYHRLPVQDEQQRTSVSAGGEGQSP 699
            +TR+    +  ++LEV  G D+VE++S + RR+  G+ VL G+GTV+NVTLRQP  TPG+          +T HGRF+ILS++ T LP  A  PP     +I LAG QGQ+VGGSVV P +            +N  + RLP+++E++      GG G  P
Sbjct:  105 VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQP-VTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA--PPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPIEEEEEEGGGGGGGGGGGP 262
The following BLAST results are available for this feature:
BLAST of FC876873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH1.943e-2640.99Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BC11RM1 EHR Citrus clementina cDNA clone KN0AAN3BC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876873 ID=FC876873; Name=FC876873; organism=Citrus clementina; type=EST; length=718bp
GCACGAGGCTCACGTGACTCTCAGGCCTCCGAGGAAGACACCAACAGCCA
CAACTCCCCTGTTACCACTCCTCCAACCACCAACCCCGCCGCCGCCGCCG
CTAAATCAAGACAACAACAACAACAACAACAACAGCTTCAGGAACCCACC
ACCACCGGAGGGGATGGTGCTACTATCGAAGTCGTCCGCCGCCCCAGGGG
CAGACCCCCTGGCTCCAAGAACAAGCCCAAGCCTCCTGTTTATATCACCC
GCGAGCCAGAACCCGGCATGAGCCCTTACATTCTCGAAGTCCCCGGCGGA
AACGACGTCGTGGAGACCATCTCCAACTTCTGCAGGCGCAAGAACATCGG
TATCTGCGTGCTCACAGGGTCGGGCACCGTCGCCAACGTTACCCTCCGTC
AGCCCTCCGCGACTCCTGGGTCCACCATCACGTTCCACGGGAGGTTCGAC
ATTCTCTCGATATCCGCGACGTTCTTGCCCCAAAACGCAGCGTATCCGCC
CTTGCCCAACATATTCGCGATATCGCTGGCTGGGCCGCAGGGGCAGATCG
TGGGTGGATCCGTGGTCGGACCGCGGCTGGCTGTTGGGACGGTGTTCGTG
GTGGCCGCTACGTTTAACAACCCGTCGTATCACCGGCTGCCGGTGCAGGA
CGAGCAGCAAAGGACTTCAGTTTCAGCTGGCGGTGAAGGGCAGTCGCCTG
TGGGATCTAGTGGCGGAG
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