FC876875

Overview
NameFC876875
Unique NameFC876875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10418 contig Ccv1_Contig10418:1..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.404e-37
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            +AGSSHAKGIVLE IGIEAKQP SAIRKCARVQLIKNGKKIAAFVP+DGCLNY
Sbjct:   40 FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92          

HSP 2 Score: 75.485 bits (184), Expect = 2.404e-37
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWKKP 189
            MGKTRG GA R LK+HRRR RWADKSY KSHLGNEWKKP
Sbjct:    1 MGKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKP 39          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.995e-36
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            +AGSSHAKGIVLE IGIEAKQP SAIRKCARVQLIKNGKKIAAFVP+DGCLNY
Sbjct:   40 FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92          

HSP 2 Score: 72.4034 bits (176), Expect = 1.995e-36
Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWKKP 189
            MGKT G GA R LKSHRR  RWADKSY KSHLGNEWKKP
Sbjct:    1 MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKP 39          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.371e-34
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            +AGSSHAKGIVLE IGIEAKQP SAIRKCARVQLIKNGKKIAAFVP+DGCLNY
Sbjct:   40 FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 92          

HSP 2 Score: 66.2402 bits (160), Expect = 1.371e-34
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWKKP 189
            MGKTRG GAGR LK  R   RWADK Y KSHLGNEWKKP
Sbjct:    1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKP 39          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.736e-28
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKKI AFVP DGCLN+
Sbjct:   41 FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNF 93          

HSP 2 Score: 53.5286 bits (127), Expect = 4.736e-28
Identity = 23/37 (62.16%), Postives = 24/37 (64.86%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK RG    R LK+HRR  RW DK Y KSHLG  WK
Sbjct:    1 MGKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWK 37          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.909e-27
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKKI AFVP DGCLNY
Sbjct:   41 FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNY 93          

HSP 2 Score: 48.9062 bits (115), Expect = 3.909e-27
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK RG    R  +SHRR  RW DK Y K+HLG  WK
Sbjct:    1 MGKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWK 37          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.625e-27
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE IG+EAKQP SAIRKC RVQLIKNGKKI AFVP+DGCLN+
Sbjct:   41 FGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF 93          

HSP 2 Score: 48.1358 bits (113), Expect = 6.625e-27
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK +G    R LK+HR+  RW DK Y K+H+G  WK
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWK 37          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.462e-26
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            +  +SHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKKI AFVP+DGCLN+
Sbjct:   41 FGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF 93          

HSP 2 Score: 50.447 bits (119), Expect = 1.462e-26
Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK +G  A R LK+HR+  RW DK Y K+HLG  WK
Sbjct:    1 MGKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWK 37          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.224e-26
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKK+ AFVP DGCLN+
Sbjct:   41 FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 93          

HSP 2 Score: 48.1358 bits (113), Expect = 3.224e-26
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK RG    R   +HRR  RWADK Y K+H+G  WK
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWK 37          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.224e-26
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKK+ AFVP DGCLN+
Sbjct:   41 FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNH 93          

HSP 2 Score: 48.1358 bits (113), Expect = 3.224e-26
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK RG    R   +HRR  RWADK Y K+H+G  WK
Sbjct:    1 MGKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWK 37          
BLAST of FC876875 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 7.112e-26
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 2
Query:  191 YAGSSHAKGIVLEIIGIEAKQPKSAIRKCARVQLIKNGKKIAAFVPDDGCLNY 349
            + G+SHAKGIVLE +G+EAKQP SAIRKC RVQLIKNGKKI AFVP+DGCLN+
Sbjct:   41 FGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF 93          

HSP 2 Score: 45.0542 bits (105), Expect = 7.112e-26
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = 1
Query:   73 MGKTRGRGAGRMLKSHRRRPRWADKSYDKSHLGNEWK 183
            MGK RG    R L+SHRR  +W DK Y K+HLG   K
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALK 37          
The following BLAST results are available for this feature:
BLAST of FC876875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS23_FRAAN2.404e-3792.4540S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.995e-3692.4540S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.371e-3492.4540S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS23_LUMRU4.736e-2879.2540S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA3.909e-2781.1340S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_CAEEL6.625e-2781.1340S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_BRUMA1.462e-2677.3640S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_SPOFR3.224e-2677.3640S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA3.224e-2677.3640S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_RAT7.112e-2679.2540S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG04RM1 EHR Citrus clementina cDNA clone KN0AAN1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876875 ID=FC876875; Name=FC876875; organism=Citrus clementina; type=EST; length=354bp
GCACGAGGCTCTTGCAACTCTCATGCTCCAAAGTCGTTCGTTACAGTCAA
AAATCCTCTTCGTAACGCCAACATGGGGAAGACACGTGGAAGGGGAGCGG
GTCGCATGCTGAAGAGCCACCGCAGAAGACCAAGGTGGGCTGATAAGTCA
TACGACAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTATGCTGGCT
CTTCCCATGCAAAAGGCATTGTTCTTGAGATAATCGGTATCGAGGCAAAG
CAGCCCAAGTCCGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAA
TGGAAAGAAGATTGCAGCTTTCGTACCAGACGATGGTTGTTTGAACTACT
TTGA
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