FC876876

Overview
NameFC876876
Unique NameFC876876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:5..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 2.989e-89
Identity = 156/196 (79.59%), Postives = 166/196 (84.69%), Query Frame = 3
Query:   66 MPPKHQ--SKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK    SKA+LAKKQK+VEDKTFGL NKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQRKGEKIDIY+DKRD ETMEDWDQETLEKVV SK  EYQQNKPTDIVCKYFL++VE KQYGWFWVCPNGGKDCHYRHA
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHA 196          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 5.636e-88
Identity = 151/195 (77.44%), Postives = 167/195 (85.64%), Query Frame = 3
Query:   66 MPPKHQSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKE-TMEDWDQETLEKVVESKNNEYQQNKPTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK Q KA+LAKKQK VEDKTFGL NKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKGEKIDIYSD RD++  M++WDQETLEKVVESK NEY QNKPTDIVCKYFL++VE KQYGWFW CPNGGK+CHYRHA
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWFWSCPNGGKECHYRHA 195          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 102/211 (48.34%), Postives = 135/211 (63.98%), Query Frame = 3
Query:   66 MPPKHQS------KAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNKP-TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK Q+      KAE  KK+KI+EDKTFGL NK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVC++FLE++EN +YGWFWVCP GG +C YRHA
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHA 210          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 102/211 (48.34%), Postives = 135/211 (63.98%), Query Frame = 3
Query:   66 MPPKHQS------KAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNKP-TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK Q+      KAE  KK+KI+EDKTFGL NK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVC++FLE++EN +YGWFWVCP GG +C YRHA
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHA 210          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.772e-49
Identity = 103/211 (48.82%), Postives = 134/211 (63.51%), Query Frame = 3
Query:   66 MPPKHQS------KAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNKP-TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK Q+      KAE  KK+KI+EDKTFGL NK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCK+FLE++EN +YGWFWVCP GG  C YRHA
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHA 210          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.772e-49
Identity = 103/211 (48.82%), Postives = 134/211 (63.51%), Query Frame = 3
Query:   66 MPPKHQS------KAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNKP-TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK Q+      KAE  KK+KI+EDKTFGL NK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCK+FLE++EN +YGWFWVCP GG  C YRHA
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHA 210          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.315e-49
Identity = 102/203 (50.25%), Postives = 131/203 (64.53%), Query Frame = 3
Query:   72 PKHQSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNKP-TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            P+   K E  KK+KI+EDKTFGL NK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD++ LE+VV  K+ E ++ KP T IVCK+FLE++EN +YGWFWVCP GG  C YRHA
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELEKDTMENWDEKKLEEVVNKKHGEAEKIKPKTQIVCKFFLEAIENNKYGWFWVCPGGGDMCMYRHA 211          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.501e-48
Identity = 101/211 (47.87%), Postives = 134/211 (63.51%), Query Frame = 3
Query:   66 MPPKHQS-------KAELAKKQKIVEDKTFGLNNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNKP-TDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK Q        KA+  KK+KI+EDKTFGL NK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCKYFL+++EN +YGWFWVCP GG +C YRHA
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHA 211          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.343e-48
Identity = 100/203 (49.26%), Postives = 129/203 (63.55%), Query Frame = 3
Query:   72 PKHQSKAELAKKQKIVEDKTFGLNNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNNEYQQNK-PTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            P+   K E  KK+KI+EDKTFGL NK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD++ LE+VV  K+ E ++ K  T IVCK+FLE++EN +YGWFWVCP GG  C YRHA
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEKIKAKTQIVCKFFLEAIENNKYGWFWVCPGGGDTCMYRHA 211          
BLAST of FC876876 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.447e-48
Identity = 102/217 (47.00%), Postives = 135/217 (62.21%), Query Frame = 3
Query:   66 MPPKHQS------KAELAKKQKIVEDKTFGLNNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD-----KETMEDWDQETLEKVVESKNNEYQQNK-PTDIVCKYFLESVENKQYGWFWVCPNGGKDCHYRHA 647
            MPPK  +      K +  KK+KI+EDKTFGL NK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDPKS+LC F+K GQC KG KCKFSHDL+++RK EK  +Y D RD     K+TME+WD++ LE+VV  K+ E ++ K  T IVCKYFL+++EN +YGWFWVCP GG +C YRHA
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKAKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHA 211          
The following BLAST results are available for this feature:
BLAST of FC876876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
C3H11_ORYSJ2.989e-8979.59Zinc finger CCCH domain-containing protein 11 OS=O... [more]
C3H21_ARATH5.636e-8877.44Zinc finger CCCH domain-containing protein 21 OS=A... [more]
ZC3HF_RAT1.357e-4948.34Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE1.357e-4948.34Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN1.772e-4948.82Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN1.772e-4948.82Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR2.315e-4950.25Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_CHICK1.501e-4847.87Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_XENLA3.343e-4849.26Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_DANRE7.447e-4847.00Zinc finger CCCH domain-containing protein 15 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CG07RM1 EHR Citrus clementina cDNA clone KN0AAN1CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876876 ID=FC876876; Name=FC876876; organism=Citrus clementina; type=EST; length=647bp
CGCACGAGGAATTAAATCGAGGATATTTTATTTTGTCTTGTTATTGAATT
TGATGATCATAAAAGATGCCGCCGAAGCATCAATCGAAAGCAGAATTAGC
GAAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAACAACAAAA
ACAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTT
CAGCCCAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGA
AGAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTA
GTCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAG
TTTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACA
TGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACA
AGCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAG
GTTGTGGAATCAAAGAATAATGAATACCAGCAGAACAAACCTACAGATAT
TGTTTGTAAATACTTTTTAGAATCTGTGGAGAATAAACAGTATGGCTGGT
TTTGGGTCTGCCCAAATGGTGGTAAAGATTGCCATTACAGGCATGCT
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