FC876905

Overview
NameFC876905
Unique NameFC876905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length280
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig933 contig Ccv1_Contig933:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.438e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  283 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 374          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 9.322e-46
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVIKLGDKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  273 ESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 364          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.712e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  281 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 372          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.042e-45
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVIKL DKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  274 ESGVIKLDDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 365          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.944e-43
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  280 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 370          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.944e-43
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  277 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.944e-43
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLA+DLG
Sbjct:  277 ESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLG 367          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.539e-43
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVIKLGD+QA+SKCALVYGQMNEPPG+RARVGLTGLTVAEHFRDAEG+DVLLF+D  FRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  269 ESGVIKLGDQQAESKCALVYGQMNEPPGSRARVGLTGLTVAEHFRDAEGEDVLLFVDKRFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 360          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.647e-43
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVIKLGDK+ +SKC LVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLF+DNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG
Sbjct:  229 ESGVIKLGDKRGESKCTLVYGQMNEPPGARARVALTGLTVAEYFRDVEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 320          
BLAST of FC876905 vs. ExPASy Swiss-Prot
Match: ATPB_SCHGA (ATP synthase subunit beta, mitochondrial (Fragment) OS=Schizaphis graminum PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.057e-37
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI L DK   SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:   39 ESGVISLKDKT--SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 127          
The following BLAST results are available for this feature:
BLAST of FC876905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_HEVBR1.438e-46100.00ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_ORYSJ9.322e-4697.83ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_NICPL2.712e-4596.74ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBM_MAIZE6.042e-4596.74ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBO_ARATH1.944e-4394.51ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBN_ARATH1.944e-4394.51ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH1.944e-4394.51ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBM_DAUCA2.539e-4392.39ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBM_CHLRE9.647e-4391.30ATP synthase subunit beta, mitochondrial OS=Chlamy... [more]
ATPB_SCHGA6.057e-3787.91ATP synthase subunit beta, mitochondrial (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BE11RM1 EHR Citrus clementina cDNA clone KN0AAN3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876905 ID=FC876905; Name=FC876905; organism=Citrus clementina; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCTGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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