FC876906

Overview
NameFC876906
Unique NameFC876906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.427e-23
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVNKL 600
            LRVSGV++NSP IL LDCDMY NDP +  +A+C+  DPKI + L FVQFPQ F  I+K DIY   ++  + +N +
Sbjct:  308 LRVSGVMTNSPIILTLDCDMYSNDPATPVRALCYLTDPKIKTGLGFVQFPQTFQGISKNDIYACAYKRLFEINMI 382          

HSP 2 Score: 43.5134 bits (101), Expect = 1.427e-23
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 3
Query:  153 QIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            Q++Q++  + +  ++     MP LIYVSREK     HHFKAGALN L+ +S
Sbjct:  264 QVLQNSENDMDDTKK---YIMPNLIYVSREKSKVSSHHFKAGALNTLLRVS 311          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.417e-23
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            LRVS V++NSP IL LDCDMY N+PT+   A+C+  DPKI+  L FVQFPQKF  +NK DIY    +  + +N
Sbjct:  279 LRVSAVMTNSPIILTLDCDMYSNNPTTPLHALCYLSDPKINFDLGFVQFPQKFQGVNKNDIYASELKRPFDIN 351          

HSP 2 Score: 41.9726 bits (97), Expect = 2.417e-23
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 3
Query:  213 MPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            MP LIYVSREK     HHFKAGALN L+ +S
Sbjct:  252 MPNLIYVSREKSKVSPHHFKAGALNTLLRVS 282          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.142e-23
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            LRVSGV++NSP IL LDCDMY NDP +  +A+C+  DP+I S L +VQFPQKF  I+K DIY    +  + +N
Sbjct:  289 LRVSGVMTNSPIILTLDCDMYSNDPATLVRALCYLTDPEIKSGLGYVQFPQKFLGISKNDIYACENKRLFIIN 361          

HSP 2 Score: 43.8986 bits (102), Expect = 3.142e-23
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 3
Query:  153 QIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            Q++Q++  + +  R+     MP LIYVSREK     HHFKAGALN L+ +S
Sbjct:  245 QVLQNSETDMDNTRK---YIMPNLIYVSREKSKVSPHHFKAGALNTLLRVS 292          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.565e-22
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVSGV+SN+PY+L +DCD Y N+  + R+AMCF +DP+    + +VQFPQ+F  I+++D Y  R
Sbjct:  546 IRVSGVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNR 610          

HSP 2 Score: 47.3654 bits (111), Expect = 2.565e-22
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 3
Query:  180 SETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            S+ +R  +  E+P L+YVSREKRP   HH KAGA+N L+ +S
Sbjct:  508 SDGVRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVS 549          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.559e-22
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVSGV+SN+PY+L +DCD Y N+  + R+AMCF +DP+    + +VQFPQ+F  I+K D Y  R
Sbjct:  534 IRVSGVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDKSDRYSNR 598          

HSP 2 Score: 45.8246 bits (107), Expect = 9.559e-22
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  189 IRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            +R  +  E+P L+YVSREKRP   HH KAGA+N L+ +S
Sbjct:  499 VRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVS 537          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 9.620e-22
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCV 591
            +RVS VIS+SP IL +DCDMY N+  S R A+CF LD ++   + FVQ+PQ F+N+ + DIY   F  +Y V
Sbjct:  295 IRVSSVISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEMGQKIGFVQYPQIFNNMTQNDIYGNSFNVSYHV 366          

HSP 2 Score: 45.8246 bits (107), Expect = 9.620e-22
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 3
Query:  153 QIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            QI+ D  G++      D   +P ++YV+REKRP + H+FKAGALN L+ +S
Sbjct:  250 QILID--GKNRNAIDDDRNVLPTMVYVAREKRPQYHHNFKAGALNALIRVS 298          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.638e-21
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570
            +RVS V++N+P+IL LDCD Y N+  + R+AMCF +DP +   + FVQFPQ+F  I+K D Y  R
Sbjct:  454 VRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGQDVCFVQFPQRFDGIDKSDRYANR 518          

HSP 2 Score: 45.4394 bits (106), Expect = 4.638e-21
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3
Query:  210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            E+P L+YVSREKRP + HH KAGA N LV +S
Sbjct:  426 ELPRLVYVSREKRPGYQHHKKAGAENALVRVS 457          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 6.024e-21
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N P+IL LDCD Y N+  + R+AMCF +DP +   + +VQFPQ+F  I+K D Y  R    + +N
Sbjct:  529 VRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKNDRYANRNTVFFDIN 601          

HSP 2 Score: 46.2098 bits (108), Expect = 6.024e-21
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3
Query:  210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            E+P L+YVSREKRP   HH KAGA+N LV +S
Sbjct:  501 ELPRLVYVSREKRPGFQHHKKAGAMNALVRVS 532          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.836e-21
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N+P+IL LDCD Y N+  + R+AMCF +D ++   L +VQFPQ+F  I+++D Y  R    + +N
Sbjct:  483 VRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDKQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDIN 555          

HSP 2 Score: 46.2098 bits (108), Expect = 7.836e-21
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 3
Query:  210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            E+P L+YVSREKRP + HH KAGA+N LV +S
Sbjct:  455 ELPRLVYVSREKRPGYNHHKKAGAMNSLVRVS 486          
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.326e-20
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594
            +RVS V++N+P++L LDCD Y N+  + R+AMCF +DP++   + +VQFPQ+F  I+ +D Y  R    + +N
Sbjct:  537 IRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQVGRKVCYVQFPQRFDGIDVHDRYANRNTVFFDIN 609          

HSP 2 Score: 46.2098 bits (108), Expect = 1.326e-20
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 3
Query:  129 TSNSIGFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305
            T +  G  Q+    SG  +T       E+P L+YVSREKRP   HH KAGA+N L+ +S
Sbjct:  486 TRDHPGMIQVFLGHSGGHDTEGN----ELPRLVYVSREKRPGFQHHKKAGAMNALIRVS 540          
The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
CSLG3_ARATH1.427e-2353.33Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG2_ARATH2.417e-2354.79Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG1_ARATH3.142e-2354.79Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CESA6_ARATH2.565e-2249.23Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA5_ARATH9.559e-2250.77Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CSLE1_ORYSJ9.620e-2250.00Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CESA8_ARATH4.638e-2150.77Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA3_ARATH6.024e-2145.21Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA7_ORYSJ7.836e-2143.84Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ORYSJ1.326e-2042.47Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3BF01RM1 EHR Citrus clementina cDNA clone KN0AAN3BF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bp
GCACGAGGGGAACATGTGACGAAGGCTGTAGAAGATGGAGATTATGGGAA
CAGCCAAAACCACTCTACTATTATTGAGGTAACTTTGTGTCATACTCTGC
CACTTACAAGTTTAAGTTACTTTATTTAACATCTAATTCAATTGGATTCC
AGCAGATAATACAAGATACTTCTGGTGAGAGTGAGACAATTAGGCAAGCA
GATCTTGTTGAAATGCCTTTGCTTATTTATGTTTCTCGTGAGAAAAGGCC
TGATCATCTTCATCATTTCAAGGCTGGAGCCCTCAATGTTCTTGTATGAA
TCAGTATACGCACAACCTACAGATTATACTTGTTTGTATTTAAAATGCTC
TGATTAACATTGTTCAAGCTTGCAGCTTCGTGTCTCTGGCGTGATAAGCA
ATTCTCCCTACATATTGGGGCTGGACTGTGATATGTACTGCAATGATCCA
ACTTCAGCTAGGCAAGCAATGTGTTTCCACCTTGACCCAAAAATCTCTTC
GTCCTTAGCATTCGTTCAGTTCCCTCAGAAATTCCATAATATCAATAAGT
ATGATATCTACNATGGACGGTTTAGATCTGCATATTGCGTAAATAAATTA
AAGCCTATCTACTATCCCCTTATGCAGATAAATGAGCCAATATTAAACCA
CTAGATGTAGCAATTATGTACAT
back to top