FC876906
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.427e-23 Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVNKL 600 LRVSGV++NSP IL LDCDMY NDP + +A+C+ DPKI + L FVQFPQ F I+K DIY ++ + +N + Sbjct: 308 LRVSGVMTNSPIILTLDCDMYSNDPATPVRALCYLTDPKIKTGLGFVQFPQTFQGISKNDIYACAYKRLFEINMI 382 HSP 2 Score: 43.5134 bits (101), Expect = 1.427e-23 Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 3 Query: 153 QIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 Q++Q++ + + ++ MP LIYVSREK HHFKAGALN L+ +S Sbjct: 264 QVLQNSENDMDDTKK---YIMPNLIYVSREKSKVSSHHFKAGALNTLLRVS 311
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.417e-23 Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 LRVS V++NSP IL LDCDMY N+PT+ A+C+ DPKI+ L FVQFPQKF +NK DIY + + +N Sbjct: 279 LRVSAVMTNSPIILTLDCDMYSNNPTTPLHALCYLSDPKINFDLGFVQFPQKFQGVNKNDIYASELKRPFDIN 351 HSP 2 Score: 41.9726 bits (97), Expect = 2.417e-23 Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 3 Query: 213 MPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 MP LIYVSREK HHFKAGALN L+ +S Sbjct: 252 MPNLIYVSREKSKVSPHHFKAGALNTLLRVS 282
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.142e-23 Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 LRVSGV++NSP IL LDCDMY NDP + +A+C+ DP+I S L +VQFPQKF I+K DIY + + +N Sbjct: 289 LRVSGVMTNSPIILTLDCDMYSNDPATLVRALCYLTDPEIKSGLGYVQFPQKFLGISKNDIYACENKRLFIIN 361 HSP 2 Score: 43.8986 bits (102), Expect = 3.142e-23 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 3 Query: 153 QIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 Q++Q++ + + R+ MP LIYVSREK HHFKAGALN L+ +S Sbjct: 245 QVLQNSETDMDNTRK---YIMPNLIYVSREKSKVSPHHFKAGALNTLLRVS 292
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.565e-22 Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVSGV+SN+PY+L +DCD Y N+ + R+AMCF +DP+ + +VQFPQ+F I+++D Y R Sbjct: 546 IRVSGVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNR 610 HSP 2 Score: 47.3654 bits (111), Expect = 2.565e-22 Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 3 Query: 180 SETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 S+ +R + E+P L+YVSREKRP HH KAGA+N L+ +S Sbjct: 508 SDGVRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVS 549
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 9.559e-22 Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVSGV+SN+PY+L +DCD Y N+ + R+AMCF +DP+ + +VQFPQ+F I+K D Y R Sbjct: 534 IRVSGVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDKSDRYSNR 598 HSP 2 Score: 45.8246 bits (107), Expect = 9.559e-22 Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3 Query: 189 IRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 +R + E+P L+YVSREKRP HH KAGA+N L+ +S Sbjct: 499 VRDVENNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVS 537
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 9.620e-22 Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCV 591 +RVS VIS+SP IL +DCDMY N+ S R A+CF LD ++ + FVQ+PQ F+N+ + DIY F +Y V Sbjct: 295 IRVSSVISDSPVILNVDCDMYSNNSDSIRDALCFFLDEEMGQKIGFVQYPQIFNNMTQNDIYGNSFNVSYHV 366 HSP 2 Score: 45.8246 bits (107), Expect = 9.620e-22 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 3 Query: 153 QIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 QI+ D G++ D +P ++YV+REKRP + H+FKAGALN L+ +S Sbjct: 250 QILID--GKNRNAIDDDRNVLPTMVYVAREKRPQYHHNFKAGALNALIRVS 298
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 4.638e-21 Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGR 570 +RVS V++N+P+IL LDCD Y N+ + R+AMCF +DP + + FVQFPQ+F I+K D Y R Sbjct: 454 VRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGQDVCFVQFPQRFDGIDKSDRYANR 518 HSP 2 Score: 45.4394 bits (106), Expect = 4.638e-21 Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3 Query: 210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 E+P L+YVSREKRP + HH KAGA N LV +S Sbjct: 426 ELPRLVYVSREKRPGYQHHKKAGAENALVRVS 457
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 6.024e-21 Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N P+IL LDCD Y N+ + R+AMCF +DP + + +VQFPQ+F I+K D Y R + +N Sbjct: 529 VRVSAVLTNGPFILNLDCDHYINNSKALREAMCFLMDPNLGKQVCYVQFPQRFDGIDKNDRYANRNTVFFDIN 601 HSP 2 Score: 46.2098 bits (108), Expect = 6.024e-21 Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3 Query: 210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 E+P L+YVSREKRP HH KAGA+N LV +S Sbjct: 501 ELPRLVYVSREKRPGFQHHKKAGAMNALVRVS 532
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 7.836e-21 Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N+P+IL LDCD Y N+ + R+AMCF +D ++ L +VQFPQ+F I+++D Y R + +N Sbjct: 483 VRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDKQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDIN 555 HSP 2 Score: 46.2098 bits (108), Expect = 7.836e-21 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 3 Query: 210 EMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 E+P L+YVSREKRP + HH KAGA+N LV +S Sbjct: 455 ELPRLVYVSREKRPGYNHHKKAGAMNSLVRVS 486
BLAST of FC876906 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.326e-20 Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 376 LRVSGVISNSPYILGLDCDMYCNDPTSARQAMCFHLDPKISSSLAFVQFPQKFHNINKYDIYXGRFRSAYCVN 594 +RVS V++N+P++L LDCD Y N+ + R+AMCF +DP++ + +VQFPQ+F I+ +D Y R + +N Sbjct: 537 IRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQVGRKVCYVQFPQRFDGIDVHDRYANRNTVFFDIN 609 HSP 2 Score: 46.2098 bits (108), Expect = 1.326e-20 Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 3 Query: 129 TSNSIGFQQIIQDTSGESETIRQADLVEMPLLIYVSREKRPDHLHHFKAGALNVLV*IS 305 T + G Q+ SG +T E+P L+YVSREKRP HH KAGA+N L+ +S Sbjct: 486 TRDHPGMIQVFLGHSGGHDTEGN----ELPRLVYVSREKRPGFQHHKKAGAMNALIRVS 540 The following BLAST results are available for this feature:
BLAST of FC876906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876906 ID=FC876906; Name=FC876906; organism=Citrus clementina; type=EST; length=673bpback to top |