FC876917

Overview
NameFC876917
Unique NameFC876917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length855
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876917_ssr435 microsatellite FC876917_ssr435:435..446. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig185 contig Ccv1_Contig185:237..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876917 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.397e-16
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  456 QTCCECGEDLQSCPICRTPIQTRIRLY 536
            QTCCECG DLQ CPICR PIQTRI+LY
Sbjct:  442 QTCCECGPDLQMCPICRAPIQTRIKLY 468

HSP 2 Score: 49.6766 bits (117), Expect = 1.397e-16
Identity = 21/26 (80.77%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:  293 SIAELEQLCPICLGNPKDMAFGCGHQ 370
            S A   QLCPICL NPKDMAFGCGHQ
Sbjct:  417 SSASDNQLCPICLSNPKDMAFGCGHQ 442
[Close]
BLAST of FC876917 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.493e-15
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  456 QTCCECGEDLQSCPICRTPIQTRIRLY 536
            QTCCECG DL+ CPICR PIQTRI+LY
Sbjct:  463 QTCCECGPDLKVCPICRAPIQTRIKLY 489

HSP 2 Score: 47.3654 bits (111), Expect = 2.493e-15
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 2 
Query:  293 SIAELEQLCPICLGNPKDMAFGCGHQ 370
            S A+  QLCPICL NPK+MAFGCGHQ
Sbjct:  438 SSADDIQLCPICLSNPKNMAFGCGHQ 463
The following BLAST results are available for this feature:
BLAST of FC876917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH1.397e-1685.19E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH2.493e-1581.48E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3BG02RM1 EHR Citrus clementina cDNA clone KN0AAN3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876917 ID=FC876917; Name=FC876917; organism=Citrus clementina; type=EST; length=855bp
GCACGAGGCATCTTCCAGCAGCAGCACAAAACCTTCATGGTCAAGCAGTT
TTCAGCCATCTGTACCTCCTTATACTGGATGTAATGCACAAGCACCTGCT
CATTCTGGATATGATACACCAGTCAGAACGGCTTCGTCCTCAAGTTCTTT
TTATGATAACCAGGTATATTCTCTTCTGCACAGTGATGGATATGATACCA
AAACCTCATTTCTTATTAGTACAAATGTAGTTACTTGCGCTATTACCTCA
TCATTTTTTCGGATTTAACTCAAAAGGACATTAACAATTTTCTCTATTGC
TGAACTTGAGCAGCTGTGCCCCATTTGTCTTGGCAATCCAAAGGACATGG
CCTTCGGTTGCGGACATCAGGTAAATGAATTACTACATTTCGTCACTTTT
ACCATGAACTTGGAAGTTGCATCATTGAGGCTGGTTTATTTATTTATTTT
TTATTCAGACATGCTGTGAATGTGGAGAAGACCTCCAATCATGCCCCATT
TGTCGGACCCCAATACAGACGAGAATCAGGCTTTATTACGCAGTTTGCAC
CTAGATTTTTTATTTGGTTTGGCTATAGCCTATTAGCTGATTCAAATGCT
GAGGTTCCCTCAAGAGACAAAAGGTTAACCATAGACGTATCATCCATTTT
TATTTTTGTCTGAGAAATACAGATGAATTTCTGTGAAGAGACTAAAATGG
AGCTTAAATTGCAGGGGCTGTCAGAAACTTATTGGACATGAATTCATGGC
CCACAGACAAAAAGATGTAGTTGCTCGCAATCTGATGCTTAAGCTTATGT
AGCGGCTGCTCGCAAGGTGTTTCAAGTGAAGAACAAGGTTAAGCTTCTTA
AATTT
back to top