FC876920

Overview
NameFC876920
Unique NameFC876920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10435 contig Ccv1_Contig10435:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.431e-70
Identity = 143/241 (59.34%), Postives = 183/241 (75.93%), Query Frame = 3
Query:  153 SSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAG-SSNIVEKQRGTIQDCKELHQITLSALQKSLPKIR-AAHDAKTLSDARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTE-----GNKHRRRLMG-FPEWLSRKDRRILQ-SSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +S ++FCK+TP+PDACF SLKL            FLLQTLQ A+SEAGK+T+LLSGAG S+N+VE QRG++QDCK+LH IT S L++S+ KI+   +D++ L+DARAYLSAALTNK TCLE L SASG LK  LV S T+TY+++SNSLSALPK   T      GN   RRL+G FP+W+ +KD R L+ SSD  +EYD S+ L VAADGTG+F+TI +AI+FAPN S+DRV+I +K+GVY
Sbjct:   35 TSATSFCKNTPYPDACFTSLKLSISINISPNILSFLLQTLQTALSEAGKLTDLLSGAGVSNNLVEGQRGSLQDCKDLHHITSSFLKRSISKIQDGVNDSRKLADARAYLSAALTNKITCLEGLESASGPLKPKLVTSFTTTYKHISNSLSALPKQRRTTNPKTGGNTKNRRLLGLFPDWVYKKDHRFLEDSSDGYDEYDPSESLVVAADGTGNFSTINEAISFAPNMSNDRVLIYVKEGVY 275          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 74/246 (30.08%), Postives = 124/246 (50.41%), Query Frame = 3
Query:  153 SSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKI-----RAAHDAKTLSDARAYLSAALTNKNTCLES---LNS--ASGSLKQPLVNSITSTYRYVSNSLSALPKP----ATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +S+   C +T +P +CF S+              F L +L++AI E     + L      +   + +  I  C  +    L  L  S+  +     R A  A ++S+   +LSAALT+++TCL++   LNS  A G+L Q +  ++ ++  + SNSL+ + K     +  E   H RRL+GFPEWL   +RR+L+  ++D+  D      VA DG+G F TI +A+      S++R  + +K+G Y
Sbjct:   75 ASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKL-SLRVAIDELSSFPSKLRANAEQDA--RLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA-SVSNVETWLSAALTDQDTCLDAVGELNSTAARGAL-QEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIHHRRLLGFPEWLGAAERRLLEEKNNDSTPD----AVVAKDGSGQFKTIGEALKLVKKKSEERFSVYVKEGRY 311          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 72/237 (30.38%), Postives = 111/237 (46.84%), Query Frame = 3
Query:  162 SNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSL----PKIRAAHDAKTLSDARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTEGNKHRRRL--MGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNN--SDDRVVINIKQGVY 848
            +++C  TP+PD C    K             F +  ++ A+  A      L+ +G +    K++  + DC +L+  T+  L ++L    PK  AA    T  DA+ +LS ALTN  TC    +  + +     + S T     +SN L A+     T GNK        GFP WLSRKD+R+L++   +        L VA DG+G F T+  AI+ A     +  R VI +K+G+Y
Sbjct:   35 TDWCDKTPYPDPCKCYFKNHNGFQQPTQLSEFRVMLVEAAMDRAISARAELTNSGKNCTDSKKQAVLADCIDLYGDTIMQLNRTLHGVSPKAGAAKSC-TDFDAQTWLSTALTNTETCRRGSSDLNVTDFITPIVSNTKISHLISNCL-AVNGALLTAGNKGNTTANQKGFPTWLSRKDKRLLRAVRAN--------LVVAKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIY 261          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 68/252 (26.98%), Postives = 119/252 (47.22%), Query Frame = 3
Query:  159 ISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGK-----VTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLS----DARAYLSAALTNKNTCLE--SLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTE----GNKHRRRLM-------GFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            + + C ST +PD CF ++               +++      + A +     +  LL     +N+ ++++  + DC E    TL  L K++  +    + K+LS    D +  +SAA+TN+ TCL+  S + A+  ++  L +      +  SN+L+ +     T+       + R+L+       G+P WLS  DRR+LQSS        +  + VAADG+G+F T+  ++  AP     R +I IK GVY
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK---RTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSS------VTPNVVVAADGSGNFKTVAASVAAAPQGGTKRYIIRIKAGVY 311          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 68/210 (32.38%), Postives = 106/210 (50.48%), Query Frame = 3
Query:  258 LLQTLQMAISEAGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSDARAYLSAALTNKNTCLESLNSASGS------------LKQPLVNSITSTYRYVSNSLSALPK-PATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            L QT+      +   ++LL   GS N+  +      DC EL   T+  L  ++ K+R+   +  L + +  LSAA+TN  TCL+   S+               + + L  S+ +   +VS+SL+ L   P    G    +  +GFP W+S  DR +LQ   D+ + +    L VA +GTG++TTI +AI+ APN+S+ R VI IK G Y
Sbjct:   45 LNQTISNVNLSSSNFSDLLQRLGS-NLSHRDLCAFDDCLELLDDTVFDLTTAISKLRS--HSPELHNVKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIPGHIPGKV--KEDVGFPMWVSGSDRNLLQDPVDETKVN----LVVAQNGTGNYTTIGEAISAAPNSSETRFVIYIKCGEY 245          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 69/252 (27.38%), Postives = 117/252 (46.43%), Query Frame = 3
Query:  159 ISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGK-----VTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLS----DARAYLSAALTNKNTCLE--SLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTE----GNKHRRRLM-------GFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            + + C ST +PD CF ++               +++      + A +     +  LL     +N+ ++++  + DC E    TL  L K++  +    + K+LS    D +  +SAA+TN+ TCL+  S + A+  ++  L +      +  SN+L+ +     T+       + R+L        G+P WLS  DRR+LQSS        +    VAADG+G+F T+  A+  AP     R +I IK GVY
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLK---RTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDMMIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSSS------VTPNAVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVY 311          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME44_ARATH (Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 67/209 (32.06%), Postives = 100/209 (47.85%), Query Frame = 3
Query:  297 KVTNLLSGAGSSNIVEKQRGTIQDCKEL-----HQITLSALQKSLPKIRAAHDAKTLSDARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSAL-----PK-----------PATTEGNKHRR----RLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            +V+++LS     +   + +  + DC +L      ++T SA     PK +        SD R +LSAAL+N+ TC+E  +  SG +K  +  S+   Y  +   L  +     PK           P    G K R       + FP+W+   DR++L+S+     YD S    VA DGTG+FT I DAI  AP+ S  R VI IK+G+Y
Sbjct:   48 QVSSILSQFADFSGDRRLQNAVSDCLDLLDFSSEELTWSASASENPKGKGNGTGDVGSDTRTWLSAALSNQATCMEGFDGTSGLVKSLVAGSLDQLYSMLRELLPLVQPEQKPKAVSKPGPIAKGPKAPPGRKLRDTDEDESLQFPDWVRPDDRKLLESNG--RTYDVS----VALDGTGNFTKIMDAIKKAPDYSSTRFVIYIKKGLY 250          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 77/275 (28.00%), Postives = 124/275 (45.09%), Query Frame = 3
Query:  153 SSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLSGAGSSN---IVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHDAKTLSDARA-----YLSAALTNKNTCLESLNSASGS-------LKQPLVNS---------------ITSTYRYVSNSLSALPKPATTEGNKHRRRLMG-FPEWLSRKDRRILQS------SDDDNEYDQ---SQVLTVAADGTGDFTTITDAINFAPNNSDDRV---VINIKQGVY 848
            +S S  CK+TP P  C    K             +   +L+ +++++ K T  +      N   + +   G +QDC+ L  +T   L  S   +     +KTLS ++A      LSAALTN+ TCL+ +N+A+ S       +  PL+N                +    + V++   A PK   +     R    G  P  ++   R + +S      +DDDN+ +    S ++TV  +GTG+FTTIT+A+N APN +D      VI +  GVY
Sbjct:   29 NSSSTICKTTPDPKFC----KSVFPQTSQGDVREYGRFSLRKSLTQSRKFTRTIDRYLKRNNALLSQSAVGALQDCRYLASLTTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTCLDGINTAASSSWTIRNGVALPLINDTKLFSVSLALFTKGWVPKKKKQVASYSWAHPKNTHSHTKPFRHFRNGALPLKMTEHTRAVYESLSRRKLADDDNDVNTVLVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGVY 299          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 60/178 (33.71%), Postives = 97/178 (54.49%), Query Frame = 3
Query:  330 SNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAA-HDAKTLSDARAYLSAALTNKNTCLESLNSASGSLKQ---PLVNSITSTYRY-VSNSLSALPKPATTEGNKHRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            SN V  + G   DC+E+  ++   +  S+ ++R   ++ ++ S+   +LS+ LTN  TCLES++  S + KQ   P +  + S  R  ++  +S LP     +     R    FP WL+  DR++L+SS    +   + V  VA DGTG F T+ +A+  AP NS+ R VI +K+GVY
Sbjct:  114 SNGVRDKAG-FADCEEMMDVSKDRMMSSMEELRGGNYNLESYSNVHTWLSSVLTNYMTCLESISDVSVNSKQIVKPQLEDLVSRARVALAIFVSVLPARDDLKMIISNR----FPSWLTALDRKLLESSPKTLKVTANVV--VAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVY 284          
BLAST of FC876920 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-16
Identity = 72/239 (30.13%), Postives = 108/239 (45.19%), Query Frame = 3
Query:  159 ISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISE-AGKVTNLLSGAGSSNIVEKQRGTIQDCKELHQITLSALQKSLPKIRAAHD---AKTLSDARAYLSAALTNKNTCLESLNSASGSLKQPLVNSITSTYRYVSNSLSALPKPATTEGNK-----HRRRLMGFPEWLSRKDRRILQSSDDDNEYDQSQVLTVAADGTGDFTTITDAINFAPNNSDDRVVINIKQGVY 848
            I   C ST +   C ++LK               L++   A++E    V   +    + N  +  +  I+ CK L +        SL KI         K + D  ++LSA ++ + TCL+      G+LK  +  S+ S+    SNSL AL K  T   +       R  L G P W+S  DRR+L++ D       +   TVA DG+GDFTTI DA+   P   + R +I +KQG+Y
Sbjct:  109 IQTLCSSTLYMQICEKTLKNRTDKGFALDNPTTFLKSAIEAVNEDLDLVLEKVLSLKTEN--QDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGFEE--GNLKSEVKTSVNSSQVLTSNSL-ALIKTFTENLSPVMKVVERHLLDGIPSWVSNDDRRMLRAVDVKALKPNA---TVAKDGSGDFTTINDALRAMPEKYEGRYIIYVKQGIY 339          
The following BLAST results are available for this feature:
BLAST of FC876920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PME12_ARATH6.431e-7059.34Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU1.360e-1930.08Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME59_ARATH2.171e-1730.38Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME3_CITSI2.171e-1726.98Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME40_ARATH2.835e-1732.38Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME1_CITSI3.703e-1727.38Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME44_ARATH8.249e-1732.06Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME41_ARATH1.838e-1628.00Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME18_ARATH2.400e-1633.71Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME13_ARATH3.135e-1630.13Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BG06RM1 EHR Citrus clementina cDNA clone KN0AAN3BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876920 ID=FC876920; Name=FC876920; organism=Citrus clementina; type=EST; length=849bp
TTCGGCACGAGGCTATTCACTCTGCCTTCTTCATATCGGCTGTCATGGCT
ACTTCCTCCTTTCTGAAACTCACCTTGCTCCTCTTCACAATCTCCATCTA
CATCACAGCTACTCTAAGCACTCCTTCAACAACTTCTCTACACACCAACA
TATCTTCAATAAGCAATTTTTGCAAAAGCACTCCGCACCCAGATGCTTGT
TTTGAGTCATTGAAGCTCTCTATATCAATCAATATCAGTCCAAACATCAT
CAACTTCTTGCTTCAAACTCTCCAAATGGCCATATCCGAAGCCGGGAAGG
TCACCAATCTATTGTCCGGTGCAGGCAGCTCTAATATTGTCGAGAAACAG
AGAGGCACAATCCAAGATTGTAAAGAACTTCACCAAATCACATTATCCGC
TTTACAGAAATCTCTCCCGAAAATCCGTGCAGCTCATGATGCTAAAACCT
TATCCGATGCAAGAGCATATCTCAGTGCAGCTCTAACAAATAAGAATACT
TGTTTAGAGAGCCTTAACTCTGCTTCAGGTTCTTTGAAGCAACCTTTAGT
GAACTCTATAACAAGTACTTACAGGTATGTGAGCAACTCCCTGTCAGCAC
TTCCAAAGCCAGCTACGACAGAAGGCAACAAACACCGCCGCCGCCTAATG
GGATTTCCAGAATGGTTGTCAAGAAAAGATCGCCGGATTCTGCAGAGCTC
CGATGACGATAATGAGTATGACCAGAGTCAAGTGCTGACTGTGGCTGCCG
ATGGAACAGGAGATTTCACTACCATCACTGATGCGATAAATTTTGCTCCC
AATAACAGCGATGATAGAGTAGTCATCAATATCAAACAAGGGGTTTATG
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