FC876922

Overview
NameFC876922
Unique NameFC876922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876922_ssr83 microsatellite FC876922_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876922_ssr346 microsatellite FC876922_ssr346:346..357. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig402 contig Ccv1_Contig402:28..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876922 vs. ExPASy Swiss-Prot
Match: AB7I_ARATH (Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.454e-57
Identity = 116/206 (56.31%), Postives = 140/206 (67.96%), Query Frame = 1 
Query:  199 NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDXXXXXXXXXXXXXXXXKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLXVIYVPAGCKVENPIYLKYLSVE 807
            N++  PKL   RR     + V  Q     A+FSDPFV+QLAESLED                ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGAPDL VIYVP GCKVENPIYL+Y S E
Sbjct:   15 NLSSKPKLKSNRRTTSTSVSVRAQ-----ASFSDPFVLQLAESLEDSLSASPSSSLPLQ---RIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFTNAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGAPDLMVIYVPEGCKVENPIYLRYFSGE 212
The following BLAST results are available for this feature:
BLAST of FC876922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AB7I_ARATH4.454e-5756.31Protein ABCI7, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BG09RM1 EHR Citrus clementina cDNA clone KN0AAN3BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876922 ID=FC876922; Name=FC876922; organism=Citrus clementina; type=EST; length=809bp
GCACGAGGCAAAGCACGACTCCTTTTAACCAGAACGAGAACTGTAGACAC
AAACTCGAAACCGAGTCTCAAACTGTCTGGTCACAACAACAACACACTTC
ATCCAGATCCCAATCTATGTATAATCTAATCTATTAACAGCAAACACCAT
CATCATTCATCAATGTCTGCACTTTCATTCTCACCACATCTTCACATAAA
CATAAACAGAAACCCCAAACTCACTCCAAAACGAAGAGCTAAACCCAACA
AGATCAGAGTTTCACTGCAAACAACTTTTCCACAAGCCACCTTTTCAGAC
CCTTTTGTGATCCAGTTAGCAGAGTCCCTTGAAGACTCTCTCCCCTCATC
ATCATCATCTTTACCGCAGCCTTTGCCTCTCCAGAAACTTCGAGACTCTT
CCTCACAAACCCTCCTGTCAACCCCTTGGCCTTCTCGCAAAGATGAACCT
TTTCGCTTCACTGACACTTCAATGATCAAAAGCTCCCAAATTCAACCCAT
TACTCGTCCTTCTTCTTCATTGGATGTTTCAACCGATGCCCAGTTCCCTA
GTCTTGTTCTTATTGATGGGTTTATCCAAAATTCCGCTTTGAATTTGTCA
AATTTACCTGACGGGGTCTATGTTGGCAGCTTATTAGGTGTATCTGATGG
GATTATGAAGAGGGTTAGTGATTTTATAAGTGAATTTCAATGTGGTGATT
TGTTTTGGTCAATTAATGGGATGGGGGCTCCTGATTTANGGGTTATTTAT
GTTCCGGCAGGCTGTAAGGTAGAGAATCCCATTTATTTGAAGTACTTATC
AGTTGAAGG
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