FC876925

Overview
NameFC876925
Unique NameFC876925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10432 contig Ccv1_Contig10432:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876925 vs. ExPASy Swiss-Prot
Match: FIP37_ARATH (FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana GN=FIP37 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.326e-18
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:  325 SLQNCKDTLATCQLELEAAKSEIQKWHSSFQNELFIPPGTSPG*PFHRLLYLLIFKFI*TCNFSFLFGNHIISSLFTFQTIYVYFLFFVEPRLVINYLQTLKSSQEMLKEQLRKAKKKEAA 687
            SL+NCKD LA+CQ ELE+AK+EIQKW S+FQNE F+P G SP                                               EPR +I+Y+Q LKSS++ LKEQL  AK+KEA+
Sbjct:   60 SLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSP-----------------------------------------------EPRFLIDYIQNLKSSEKSLKEQLEIAKRKEAS 133

HSP 2 Score: 26.5646 bits (57), Expect = 8.326e-18
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 3 
Query:  171 APGVATGMILSLR 209
            APGV TGMILSLR
Sbjct:   46 APGVRTGMILSLR 58
The following BLAST results are available for this feature:
BLAST of FC876925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FIP37_ARATH8.326e-1841.32FKBP12-interacting protein of 37 kDa OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BH01RM1 EHR Citrus clementina cDNA clone KN0AAN3BH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876925 ID=FC876925; Name=FC876925; organism=Citrus clementina; type=EST; length=688bp
GCACGAGGGCTTCACGGACTCATCTCGACGATGACGACGATTTTGGCGGC
GATTTTTCTGCTAATCATAATTCTAGACGTTCTGGCTCGAAGAGAAGCTT
CGGTGATATTGAAGATGACGAGGACGATATTTTTGGTTCAAGAAAGGCTA
ATTCAAAAGTGGAAGAAACTGCTCCTGGAGTTGCAACTGGGATGATTTTG
TCTCTGCGTGAGAGGTTTTATAAAACCACTGAAATCTCTTACTTTGCTGC
TTAGATTCCTAATACTAGTGGTTGTCATGTAGTATTCTTCAAAGCTTCAT
TTTATTCTTGGGATTTTCTTTTGCAGTCTTCAGAACTGTAAGGACACACT
TGCAACATGCCAATTGGAACTTGAAGCTGCGAAGTCGGAGATTCAGAAGT
GGCATTCTTCATTCCAAAATGAGCTCTTCATACCTCCTGGGACATCTCCT
GGTTAGCCTTTCCATAGATTGTTGTACTTGCTCATTTTCAAGTTTATTTA
AACGTGTAATTTTTCTTTTCTTTTTGGTAATCATATCATAAGTTCTTTAT
TTACGTTTCAGACAATTTATGTCTATTTTCTATTCTTTGTAGAACCTAGA
TTAGTCATCAATTATCTTCAGACCCTAAAATCCTCCCAGGAGATGCTGAA
GGAACAGTTAAGAAAAGCAAAGAAAAAGGAAGCTGCCT
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