FC876928

Overview
NameFC876928
Unique NameFC876928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length882
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876928 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.144e-91
Identity = 149/231 (64.50%), Postives = 174/231 (75.32%), Query Frame = 3
Query:   15 STFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQG-----------SKKETRVDVEEEKSEEV--GTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLA 668
            STF  GVSPYFYRWNESFLLLGTQF+GG+FL T+++HFLSD+NETF+ L  K YP+AFMLA+AGY LTM  D  + FV               S+++  V V+EE   E+  G D +    RTS  GDT LLI ALCFHS+FEGIAIG+S TK +AWRNLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YAISMGLA
Sbjct:   74 STFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLA 304          

HSP 2 Score: 60.8474 bits (146), Expect = 1.144e-91
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  673 GVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAV 774
            GVF+YVA+NHLI+KG+KP+ +CYFD P +KF+AV
Sbjct:  306 GVFVYVAVNHLISKGYKPREECYFDKPIYKFIAV 339          

HSP 3 Score: 23.0978 bits (48), Expect = 1.144e-91
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  782 GVGVIAVVMIWD 817
            GV +++VVMIWD
Sbjct:  342 GVALLSVVMIWD 353          
BLAST of FC876928 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.269e-81
Identity = 137/227 (60.35%), Postives = 170/227 (74.89%), Query Frame = 3
Query:   12 VSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT--------SKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLA 668
            V TF  GVSPYF +W++ FL+LGTQFAGGVFL T++MHFLSD++ETF+ L         S +YPFA+MLA AG++LTM  D +I  +  + ++ +  +  E++ ++   T         +SIGD+ILLI+ALCFHSVFEGIAIG+S TK +AWR LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAFAISSPIGV IGI IDATTQG IADWI+A+SM LA
Sbjct:   58 VLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSK-TQNDLELQGEDKSNQRSATT-------ETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLA 276          

HSP 2 Score: 52.7582 bits (125), Expect = 7.269e-81
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  673 GVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVL 777
            GVF+YV++NHL+AKG++P  K + D P +KFLAVL
Sbjct:  278 GVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVL 312          

HSP 3 Score: 24.6386 bits (52), Expect = 7.269e-81
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  782 GVGVIAVVMIWD 817
            GV VIA+VMIWD
Sbjct:  314 GVVVIAIVMIWD 325          
BLAST of FC876928 vs. ExPASy Swiss-Prot
Match: S39A1_TAKRU (Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 57/201 (28.36%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMH----FLSDSN-ETFKDLTSKSYPFAFMLASAGYLLTMFGDCII-NFVIKQGSKKETRVDVEEEKSEEVGTDGNP-----------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAI 608
            + + L L + FAGGVFL    +     +LSD N E        S+P    + +AG+   +  + I+ N    + + +E    + E KS      G+            V F+  S   + +L L+L  HS+FEG+AIG+  T  +       I +HK     ++ + L++     P L  AAY   FA+ SP+G+ IGI++
Sbjct:   41 HRTVLSLISCFAGGVFLSACFLDIIPDYLSDINTELHARQLETSFPLPEFIMAAGFFTVLILERIVLNCKEMRATHEERTTLIPERKSGHGHGHGDGPDPESSGHHVHVDFQAHSPFRSFMLFLSLSLHSIFEGLAIGLQTTDPKVVEICIAILVHKSIIVFSLAVKLVQ--SAIPPLWVAAYIGVFALMSPVGIAIGISV 239          
The following BLAST results are available for this feature:
BLAST of FC876928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZIP2_ARATH1.144e-9164.50Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH7.269e-8160.35Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
S39A1_TAKRU9.419e-1128.36Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc3... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BH05RM1 EHR Citrus clementina cDNA clone KN0AAN3BH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876928 ID=FC876928; Name=FC876928; organism=Citrus clementina; type=EST; length=882bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGGTGGGGTTTTCATATATGTTGCCATCAACC
ATCTCATTGCCAAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCT
CCTTTCTTTAAGTTTCTTGCTGTGCTTAAGTGGAGTTGGAGTCATTGCAG
TTGTTATGATTTGGGATTAATCTCTTTTTATTTTTCTTCCCCTCCCCCCT
TGGGGTGCTTGGTTAATTGGCTTTGTCTTTGT
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