FC876935

Overview
NameFC876935
Unique NameFC876935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876935_ssr147 microsatellite FC876935_ssr147:147..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10436 contig Ccv1_Contig10436:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876935 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  470 ATGPTAGREGASAAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLTCAACNCHRNFHRNETDGASPLAY 706
            AT    G  G S      IRYRECLKNHAV+IGGHAVDGC EFM +G++GTL++L CAAC CHRNFHR ET+     A+
Sbjct:   29 ATSSGGGGVGRSKGVGAKIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAH 107          
BLAST of FC876935 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 44/75 (58.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  455 TNASKATGPTAGREGASAAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLTCAACNCHRNFHRNE 679
            T  + +TG   G            R+RECLKN AV+IGGHAVDGCGEFM AG EGT+++L CAAC CHRNFHR E
Sbjct:   50 TTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKE 124          
The following BLAST results are available for this feature:
BLAST of FC876935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH2.179e-2260.76ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH7.749e-2058.67ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DA02RM1 EHR Citrus clementina cDNA clone KN0AAN1DA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876935 ID=FC876935; Name=FC876935; organism=Citrus clementina; type=EST; length=706bp
GCACGAGGGTTACGCAATTTTCACAAAATGGAAAGCATAAGAAAGGCTTT
CGAGTAAGGCTTGTCTTTTTTGCATCAATTGATGGCCACACTCTCCTCCA
CCTCTTATCTCCTCTTCTTCTGACCCAGTTTTTCACAAACTAAAAAATAT
ATATATATATACACACTTACTTTGCTTGTATTCATATTTTATTATATTTA
TATTATTATTAATAATAACAACACTCACAGTTATTACAGCATTTGTGTTT
TAGGTTAGGTTAGCTTATTATAGCTTACAGCTGGATCTGCTTACTAGTAA
GTAGTAACCCCCCGGCCATGTACATCTTCTCCATCAACAATTAACAAAAA
TTAAAGAGATTGAAGATTATTAATTAAGAGAGGAGGAGATGGAATTTGAG
GAGCACGAAGAGCAAGAGGTAGAAGAAATGGGGGCAGCGGAGTACGAGTC
AATGACCAACGCGTCAAAGGCAACGGGCCCCACCGCAGGAAGAGAAGGTG
CATCGGCGGCGGCCAGAAAATCCATCAGGTACCGGGAGTGTCTTAAGAAT
CACGCTGTCAGCATCGGTGGACACGCGGTTGACGGATGCGGGGAGTTCAT
GGCAGCTGGCGACGAAGGCACACTCGAATCCCTCACATGCGCCGCGTGTA
ACTGCCACAGGAATTTCCACCGTAACGAAACTGACGGCGCCTCGCCGTTG
GCCTAC
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