FC876944

Overview
NameFC876944
Unique NameFC876944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 62/167 (37.13%), Postives = 81/167 (48.50%), Query Frame = -1
Query:  198 YNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEEFLFSGAFDWKIILIGYAGGLVAGLVFG 698
            YN++  +   I +   +  G IP  +  LK               IP  L NLTNLE LDLSNN  SGRIP  +  + FL++FNV +N L+G +P G QF TF    F+GN  LCG  L   C         D T+ S   +  G  +  ++L     GLV GL FG
Sbjct:  576 YNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC---------DPTQHSTTKMGKGKVNRTLVL-----GLVLGLFFG 728          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  324 RMMAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGK---PLSKGCES 710
            R + YN+I      I L + +  G I     NLK               IPS L  +T+LE+LDLSNN+ SG IP  + +++FL+ F+V  N L+GV+P G QF TF N+ F+ N  LCG+   P S+G ES
Sbjct:  514 RALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNH-LCGEHRFPCSEGTES 644          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  339 MAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLS 704
            + YN+       I LS  S +G+I     +L+              +IP+ L  +T+LE LDLS+N  SG IP  +V+++FL+ F+V  N L+G +P G QF TF N+ F+GN GLCG+  S
Sbjct:  526 LQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHAS 647          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 44/117 (37.61%), Postives = 58/117 (49.57%), Query Frame = -1
Query:  354 MAYNKIPDILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLC 704
            + YN++      I L+N   +G I   I  LK               IP  +  L NLE LDLS N   G IP     +TFL+ F+V  N LTG +P G QF +F ++ F+GN GLC
Sbjct:  529 LPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC 645          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 57/178 (32.02%), Postives = 78/178 (43.82%), Query Frame = -1
Query:  129 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEEFLFSGAFDWKIILIGYAGGLVAGLVFGFNFSTGIFGWILGKLGRQQKATR 662
            +S     G IP  I ++                IP  +G+L  L  LDLS+NK  GRIPQ +  +T L   ++ +N L+G +P+  QF TF    F  N GLCG PL + C+   A     H         S            AG +  GL+F F     IFG IL  +GR+ +  R
Sbjct:  661 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRPAS-----------LAGSVAMGLLFSF---VCIFGLIL--VGREMRKRR 821          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  294 DILAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGC-ESGEAPSNEDHT 683
            D L  ++L N +   +IPAS+ N                 IPS +GNL+ L++LDLSNN  +G IP  + ++  L  FNV +N+L G +P            F+GN  LCGK +   C +SG + ++   T
Sbjct:   97 DQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIPSDGLLARLSRDSFNGNRNLCGKQIDIVCNDSGNSTASGSPT 227          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = -1
Query:  189 LAGIILSNKSFDGAIPASISNL-KXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCESGEAPSNEDHTEGSEEFLFSGAFDWKIILIGYAGG-----LVAGLVFGFNF 677
            L G+ LS  +F G +PA+IS L                 IP  + N+T L +L L +N+F+G +P Q+ ++  L  F+V DN L G +P   Q + F    F  N  LCGKPL   C+S  +                     K+++I   GG     LV G+V  F F
Sbjct:  102 LTGLDLSRNNFSGPLPANISTLIPLVTILDLSYNSFSGEIPMLISNITFLNTLMLQHNQFTGTLPPQLAQLGRLKTFSVSDNRLVGPIPNFNQTLQFKQELFANNLDLCGKPLD-DCKSASSSRG------------------KVVIIAAVGGLTAAALVVGVVLFFYF 251          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 46/130 (35.38%), Postives = 63/130 (48.46%), Query Frame = -1
Query:  324 YNKIPDI-----LAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCES 698
            +  IPD+     L  + LS   F GA P SI +L                IPS +  L  L SL+L  N+F+G +P   +  +FL  FNV  N LTGV+P       FD + F  N GLCG+ +++ C S
Sbjct:  110 FGPIPDLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDRLTSLNLDFNRFNGTLPS--LNQSFLTSFNVSGNNLTGVIPVTPTLSRFDASSFRSNPGLCGEIINRACAS 237          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 49/164 (29.88%), Postives = 77/164 (46.95%), Query Frame = -1
Query:  261 MAYNKI-----PDI-----LAGIILSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGCE------SGEAPSNEDHTEGSEEFLFSGA 704
            + Y+KI     PDI     L  ++L N +  GAIP ++ N                 IP+ +G+L  L+ LD+S+N  SG IP  + ++  L+ FNV +N+L G +P       F    F GN  LCGK +   C+      S  + S ++  + S + L S +
Sbjct:   81 LTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSGNPSSHSQSGQNQKKNSGKLLISAS 244          
BLAST of FC876944 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = -1
Query:  330 LSNKSFDGAIPASISNLKXXXXXXXXXXXXXXHIPSCLGNLTNLESLDLSNNKFSGRIPQQVVEVTFLAFFNVWDNYLTGVLPQGKQFVTFDNTFFDGNSGLCGKPLSKGC 662
            LS    +G +PA   NL+               IP+ LG L N+ SL L+NNK  G+IP Q+     LA  N+  N L+G++P  K F  F    F GN  LCG  +   C
Sbjct:  463 LSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPFLCGNWVGSIC 573          
The following BLAST results are available for this feature:
BLAST of FC876944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PSYR1_ARATH2.056e-2037.13Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
PSKR1_ARATH1.379e-1640.15Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
PSKR1_DAUCA1.167e-1538.52Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
PSKR2_ARATH4.905e-1437.61Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
BRI1_ARATH5.423e-1332.02Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
FEI2_ARATH7.082e-1333.59LRR receptor-like serine/threonine-protein kinase ... [more]
Y5838_ARATH9.250e-1331.36Probably inactive leucine-rich repeat receptor-lik... [more]
Y5720_ARATH1.208e-1235.38Probable inactive receptor kinase At5g67200 OS=Ara... [more]
FEI1_ARATH4.591e-1229.88LRR receptor-like serine/threonine-protein kinase ... [more]
ERL2_ARATH4.591e-1236.04LRR receptor-like serine/threonine-protein kinase ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1DB09RM1 EHR Citrus clementina cDNA clone KN0AAN1DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876944 ID=FC876944; Name=FC876944; organism=Citrus clementina; type=EST; length=710bp
TTTTTTTTTTTAAGGACAAATGTAAGGATCCATTTAAAAAAAAAACCACC
AACATTACAATGACAAAATTAAAAACGAAAATCACAACAACATTATAATT
GCATTCAGTTTCTACGTCCCCCCCTCCCCCTTGTTGCCTTTTGCTGCCTT
CCCAACTTCCCCAAAATCCATCCAAAAATTCCTGTGCTGAAGTTGAACCC
GAAAACCAATCCTGCCACAAGTCCGCCCGCGTACCCAATCAAAATGATTT
TCCAATCAAAAGCACCTGAAAACAAAAACTCCTCCGAGCCTTCAGTATGA
TCTTCATTTGAAGGAGCTTCACCACTCTCACATCCTTTGGACAAAGGCTT
TCCACACAATCCTGAGTTGCCGTCAAAAAAAGTGTTGTCAAATGTAACAA
ATTGCTTTCCTTGTGGTAAAACCCCTGTAAGGTAATTGTCCCAAACATTG
AAAAATGCGAGAAATGTGACCTCAACCACTTGTTGAGGAATCCGTCCTGA
AAACTTGTTATTTGAGAGATCTAGTGATTCCAAATTTGTTAGATTACCCA
AACATGAAGGAATATGGCCTTGGAGATTATTGTTGTGAAGGTTTAGGACT
TGAAGTCCCTTTAAATTTGAAATTGATGCTGGAATCGCCCCATCAAAACT
CTTGTTTGAGAGAATAATGCCCGCGAGGATATCCGGAATCTTGTTATATG
CCATCATTCG
back to top