FC876946

Overview
NameFC876946
Unique NameFC876946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.578e-72
Identity = 155/224 (69.20%), Postives = 173/224 (77.23%), Query Frame = 1
Query:   94 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSAK 759
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMRQATAQVLAS  RLENKYKAA+QASE WYRKAQLALQKGEEDLAREALKRRKS+A NA++LKAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTL A AQSAK
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAK 207          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.931e-67
Identity = 141/223 (63.23%), Postives = 168/223 (75.34%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSAK 759
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMRQATAQVLAS  +L+NKYKAA+Q+S+ WY++AQLAL KG+EDLAREALKRRKS+A NA ALK QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL+A A++AK
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAK 218          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.610e-64
Identity = 135/186 (72.58%), Postives = 152/186 (81.72%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSAK 759
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLAS  RLENKYKAAEQAS+ WYR+AQLALQKG+EDLAREALKRRKSYA NA++LKAQLDQQK VV NLVSNTR+LESKI EA+ KKDTL A AQSAK
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAK 204          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.231e-31
Identity = 72/147 (48.98%), Postives = 100/147 (68.03%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSAK 759
            M LFDRL RVV++  N ++S  EDPEK+LEQAV++M +DLV++RQA A+ +A   R E +     Q ++ W  +A+LAL  GEE+LAREAL R+KS    A A + QL QQ+ +  NL  N   LE+KI EA++KK+ L A A++AK
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAK 147          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: PSPA_DEIRA (Phage shock protein A homolog OS=Deinococcus radiodurans GN=DR_1473 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.270e-18
Identity = 52/147 (35.37%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSAK 759
            M++FDRL+R++++  N ++S  EDP KI++QA+ +M       R   A  +A   +LE +     + +  + +KA+ AL+ G EDLAREAL+R +++   A     Q   Q++ V+ L +  R LE+KI E  SKK  L A  ++A+
Sbjct:    1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLRALEAKIDEMESKKTLLAARQKTAQ 147          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: PSPA_SHIFL (Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSA 756
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA   +L  + + A      W  KA+LAL K  EDLAR AL  ++       +L+ ++    + +  +      LE+K+ E R+++  L+   Q+A
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAA 146          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: PSPA_ECOLI (Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSA 756
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA   +L  + + A      W  KA+LAL K  EDLAR AL  ++       +L+ ++    + +  +      LE+K+ E R+++  L+   Q+A
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAA 146          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: PSPA_ECO57 (Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSA 756
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA   +L  + + A      W  KA+LAL K  EDLAR AL  ++       +L+ ++    + +  +      LE+K+ E R+++  L+   Q+A
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAA 146          
BLAST of FC876946 vs. ExPASy Swiss-Prot
Match: LIAH_BACSU (Protein liaH OS=Bacillus subtilis GN=liaH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 1
Query:  373 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASHNRLENKYKAAEQASEHWYRKAQLALQKGEEDLAREALKRRKSYAYNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLIAMAQSAK 759
            L   E+P+ +L Q V +M  D+ K +Q   +      + + KY+ A + +     +AQLA   GEE+LA++AL   K     A   KA  +Q  + + +L      LE+K+Q+ + KK  LIA A +AK
Sbjct:   18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAK 146          
The following BLAST results are available for this feature:
BLAST of FC876946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
IM30_PEA7.578e-7269.20Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH1.931e-6763.23Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ2.610e-6472.58Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY32.231e-3148.98Uncharacterized protein sll0617 OS=Synechocystis s... [more]
PSPA_DEIRA1.270e-1835.37Phage shock protein A homolog OS=Deinococcus radio... [more]
PSPA_SHIFL7.702e-1631.51Phage shock protein A OS=Shigella flexneri GN=pspA... [more]
PSPA_ECOLI7.702e-1631.51Phage shock protein A OS=Escherichia coli (strain ... [more]
PSPA_ECO577.702e-1631.51Phage shock protein A OS=Escherichia coli O157:H7 ... [more]
LIAH_BACSU5.166e-1232.56Protein liaH OS=Bacillus subtilis GN=liaH PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DC03RM1 EHR Citrus clementina cDNA clone KN0AAN1DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876946 ID=FC876946; Name=FC876946; organism=Citrus clementina; type=EST; length=760bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCC
CCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGT
GAAGTCCTATGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGA
TTTTAGAGCAAGCAGTACTTGAAATGAATGATGACTTGGTAAAGATGCGC
CAGGCCACGGCACAAGTGTTGGCATCTCATAACCGGTTGGAAAATAAGTA
CAAAGCTGCAGAGCAAGCTTCTGAACACTGGTATCGCAAAGCACAGCTTG
CTCTTCAAAAAGGGGAAGAAGATCTGGCACGTGAGGCTCTCAAGAGACGC
AAATCTTATGCATATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACA
AAAGAATGTTGTTAATAACCTTGTTTCTAATACTCGGCTTTTGGAGAGCA
AGATACAGGAGGCAAGATCAAAGAAAGATACTCTGATAGCAATGGCTCAG
TCTGCAAAGA
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