FC876948

Overview
NameFC876948
Unique NameFC876948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14566 contig Ccv1_Contig14566:24..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876948 vs. ExPASy Swiss-Prot
Match: AKR2_ARATH (Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.431e-56
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 3 
Query:  237 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAVGLAVGG--DATTSADNAGADETEE 749
            N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQLQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  +++ +NP   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND +VL+KLGEA+G+ V G  D T SA+   A+E EE
Sbjct:   45 NAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFSNPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWNDPEVLKKLGEAMGMPVAGLPDQTVSAEPEVAEEGEE 217
The following BLAST results are available for this feature:
BLAST of FC876948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AKR2_ARATH4.431e-5661.27Ankyrin repeat domain-containing protein 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DC11RM1 EHR Citrus clementina cDNA clone KN0AAN1DC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876948 ID=FC876948; Name=FC876948; organism=Citrus clementina; type=EST; length=760bp
GCACGAGGTAATTTTAAAACCCAATCTAATCTCAATCTCCTTCACAGTCT
CTCCGATTCAGCAGCTGTTTAGTTCGCATGGCGTCTCCTCCCACCAAGGA
TGCTCCCGCTGATAAGAAAGCAAAAGGATCGACCCCTAAGTCAGAAGCAA
CTTCGGGGTCTGTTAGAGACTCATCCAGTTCGCCTTCCGCTGCTTCTGCT
GCAAGTGCTTTTCCAGGAGTTGGTGGCGCTGCTCCAAATCCTTTTGATTT
CTCCGCCATGAGTGGCCTTCTTAATGATCCGAGCATTAAGGAACTAGCTG
AACAGATTGCGAAAGATCCAGCATTCAATTCCATGGCCGAGCAACTTCAG
AAAACTTTGCATGGTGCAAATGCTGAGGAGAGTATTCCACAGTTTGACAC
AACACAGTATTACTCCACCATGCAACAGGTTATGCAGAATCCTCAGTTTA
TGACTATGGCTGAGCGCCTTGGTAATGCTTTAATGCAGGACCCATCAATG
TCTCATATGATGGAGAGTTTGACAAACCCTACAAAAAAAGACCAGATTGA
GGAAAGAATGGCAAAAATCAAGGAAGATCCCTCTTTGAAGCCTATTTTGG
ATGAGATAGAGTCTGGTGGACCATCTGCTATGATGAAGTACTGGAATGAT
AAAGATGTTTTGCAGAAATTGGGTGAAGCAGTGGGTCTTGCAGTTGGTGG
GGATGCGACCACTTCTGCTGATAATGCGGGGGCAGATGAAACAGAAGAAA
TGGGAGATGA
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