FC876949

Overview
NameFC876949
Unique NameFC876949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.005e-64
Identity = 139/206 (67.48%), Postives = 159/206 (77.18%), Query Frame = 1
Query:   94 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQA+LEMNDDL KMRQATAQVLASQ RLENKYKAA+QASE+WYRKAQLALQKGEE LAREALKRRKS+ADNA++LKAQLDQQK+VV+NLVSNTRLLESKI
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVSNTRLLESKI 189          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 130/205 (63.41%), Postives = 153/205 (74.63%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ ++EMN DL KMRQATAQVLASQ +L+NKYKAA+Q+S+DWY++AQLAL KG+E LAREALKRRKS+ADNA ALK QLDQQK VV+NLVSNTRLLESKI
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKI 200          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.468e-59
Identity = 123/168 (73.21%), Postives = 140/168 (83.33%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QA+LEMNDDL KMRQATAQVLASQ RLENKYKAAEQAS+DWYR+AQLALQKG+E LAREALKRRKSYADNA++LKAQLDQQK VV NLVSNTR+LESKI
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKI 186          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 63/129 (48.84%), Postives = 87/129 (67.44%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            M LFDRL RVV++  N ++S  EDPEK+LEQA+++M +DLV++RQA A+ +A + R E +     Q ++ W  +A+LAL  GEE LAREAL R+KS  D A A + QL QQ+ +  NL  N   LE+KI
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKI 129          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: PSPA_DEIRA (Phage shock protein A homolog OS=Deinococcus radiodurans GN=DR_1473 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            M++FDRL+R++++  N ++S  EDP KI++QAL +M       R   A  +A   +LE +     + + ++ +KA+ AL+ G E LAREAL+R +++ D A     Q   Q++ V+ L +  R LE+KI
Sbjct:    1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLRALEAKI 129          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: PSPA_SHIFL (Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA + +L  + + A     +W  KA+LAL K  E LAR AL  ++   D   +L+ ++    + +  +      LE+K+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKL 129          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: PSPA_ECOLI (Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA + +L  + + A     +W  KA+LAL K  E LAR AL  ++   D   +L+ ++    + +  +      LE+K+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKL 129          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: PSPA_ECO57 (Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKI 705
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA + +L  + + A     +W  KA+LAL K  E LAR AL  ++   D   +L+ ++    + +  +      LE+K+
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKL 129          
BLAST of FC876949 vs. ExPASy Swiss-Prot
Match: PSPA_BACSU (Phage shock protein A homolog OS=Bacillus subtilis GN=ydjF PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLVKMRQATAQVLASQNRLENKYKAAEQASEDWYRKAQLALQKGEEYLAREALKRRKSYADNANALKA-------QLDQQKNVVNNLVSNTRLLESK 702
            M++  R   ++ +  NA+L   E+PEK+++Q L  MN DL K++  TA V+A + R + +Y   +   E     A  ALQ G E  AR+ L+R+ S     + L+A          Q + + + LVS+   LE++
Sbjct:    1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQMRKMHDKLVSDIGELEAR 135          
The following BLAST results are available for this feature:
BLAST of FC876949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
IM30_PEA3.005e-6467.48Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH2.381e-6163.41Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ8.468e-5973.21Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY32.938e-2748.84Uncharacterized protein sll0617 OS=Synechocystis s... [more]
PSPA_DEIRA3.980e-1635.66Phage shock protein A homolog OS=Deinococcus radio... [more]
PSPA_SHIFL2.414e-1331.78Phage shock protein A OS=Shigella flexneri GN=pspA... [more]
PSPA_ECOLI2.414e-1331.78Phage shock protein A OS=Escherichia coli (strain ... [more]
PSPA_ECO572.414e-1331.78Phage shock protein A OS=Escherichia coli O157:H7 ... [more]
PSPA_BACSU8.587e-1131.11Phage shock protein A homolog OS=Bacillus subtilis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DD02RM1 EHR Citrus clementina cDNA clone KN0AAN1DD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876949 ID=FC876949; Name=FC876949; organism=Citrus clementina; type=EST; length=707bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCC
CCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGT
GAAGTCCTATGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGA
TTTTAGAGCAAGCACTACTTGAAATGAATGATGACTTGGTAAAGATGCGC
CAGGCCACGGCACAAGTGTTGGCATCTCAGAATCGGTTGGAAAATAAGTA
CAAAGCTGCAGAGCAAGCTTCTGAAGACTGGTATCGCAAAGCACAGCTTG
CTCTTCAAAAAGGGGAAGAATATCTGGCACGTGAGGCTCTCAAGAGACGC
AAATCTTATGCAGATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACA
AAAGAATGTTGTTAATAACCTTGTTTCTAATACTCGGCTTTTGGAGAGCA
AGATACA
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