FC876950

Overview
NameFC876950
Unique NameFC876950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: ANTR4_ARATH (Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.177e-30
Identity = 80/168 (47.62%), Postives = 100/168 (59.52%), Query Frame = 3
Query:   21 RSFSGIFQSSFLWGYLVVTDSWRSFGGLLWWEDSHGMGCGVRVISYFSYSLGC*YFFIGSAGNASCCWTSIGCGSSCDEQYGCKR-C*EMLLCFFRWFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISK 521
            +SFSGI QSSFLWGYL+   +    GG L   D +G     +V+  +  +L     F+      S  W  +   +      G    C   ++   RWFP TE + AV IAM GF  GN +GL+LSPILMSQ GI+GP VI GLSGFLW+LVWLSATSS PDRHP+I+K
Sbjct:  147 KSFSGIVQSSFLWGYLISPIA----GGTL--VDRYGG----KVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVA--RWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITK 302          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: PHT43_ORYSJ (Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.032e-26
Identity = 80/171 (46.78%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   24 SFSGIFQSSFLWGYLVVTDSWRSFGGLLWWEDSHGMGCGVRVISYFSYSLGC*YFFIGSAGNASCCW----TSIGCGSSCDEQYGCKRC*EMLLCFFRWFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISKY 524
            SF+G+ QSSFLWGYLV        GG L   D +G   G RV++Y   +L     F+     A   W    T +  G +  E         M+L   RWFP TE + AV IAM GF  GN IGL+LSPI+MS+AGIFGP VI GL GFLWVLVW+SA S TP  + +IS +
Sbjct:  134 SFAGVVQSSFLWGYLVSP----IIGGAL--VDYYG---GKRVMAY-GVALWSLATFLSPWAAARSLWLFLSTRVLLGMA--EGVALPSMNNMVL---RWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAH 289          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: ANTR3_ARATH (Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   73 SPIAGGALVDYYGGKIVMAWGVALGSLATFLTPWAADTSLLALLAMRAVVGLA*GVALPAMNNMVAR 273
            S + GGALVD YGGK V+AWGVAL SLAT LTPWAA  S LALL +RA  GLA GVA+P+M  +++R
Sbjct:  151 SSVIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSR 217          

HSP 2 Score: 81.2629 bits (199), Expect = 3.113e-15
Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 3
Query:   24 SFSGIFQSSFLWGYLVVTDSWRSFGGLLWWEDSHGMGCGVRVISY--FSYSLGC*YFFIGSAGNASCCWTSIGCGSSCDEQYGCKRC*EMLLCFFRWFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISK 521
            SF G+ QSSFLWGY+  +      GG L   D +G   G RV+++    +SL        +A +++     +       E         M     RWFP  E A AV I+M GF  GN +GL+L+P+++S  GI GP ++    G LWV  W S  ++ P   P I++
Sbjct:  135 SFLGVVQSSFLWGYIFSS----VIGGAL--VDRYG---GKRVLAWGVALWSLAT-LLTPWAAAHSTLALLCVRAFFGLAEGVAMP---SMTTLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITR 289          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: PHT42_ORYSJ (Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 40/67 (59.70%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   73 SPIAGGALVDYYGGKIVMAWGVALGSLATFLTPWAADTSLLALLAMRAVVGLA*GVALPAMNNMVAR 273
            S + GGAL D YGGK VMA   AL SLATFLTPWAA  S + LLA+RA+ GLA GVA P M+  + +
Sbjct:  175 SSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLPK 241          

HSP 2 Score: 69.707 bits (169), Expect = 9.373e-12
Identity = 57/166 (34.34%), Postives = 75/166 (45.18%), Query Frame = 3
Query:   24 SFSGIFQSSFLWGYLVVTDSWRSFGGLLWWEDSHGMGCGVRVISYFSYSLGC*YFFIGSAGNASCCWTSIGCGSSCDEQYGCKRC*EMLLCFFRWFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISK 521
            SF GI QSSFLWGY+  +      GG L   D +G G  V   +   +SL   +    +A  ++    +I       E         M     +WFP  E A AV I+MGGF  GN I  + +PI+MS  G+ G        G+LW+ VWL    S P     ISK
Sbjct:  159 SFLGIVQSSFLWGYVFSS----MVGGAL--ADRYG-GKKVMAGAAALWSLAT-FLTPWAASQSTIMLLAIRALFGLAEGVAFPT---MSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISK 313          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: S17A5_SHEEP (Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.410e-13
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   70 LSPIAGGALVDYYGGKIVMAWGVALGSLATFLTPWAADTSLLALLAMRAVVGLA*GVALPAMNNM 264
            ++ I GG +    GGK+++ +G+   ++ T  TP AAD  + AL+A+RA+ GL  GV  PAM+ M
Sbjct:  121 ITQIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADFGVGALVALRALEGLGEGVTYPAMHAM 185          

HSP 2 Score: 43.5134 bits (101), Expect = 1.410e-13
Identity = 19/73 (26.03%), Postives = 33/73 (45.21%), Query Frame = 3
Query:  306 WFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISKY 524
            W P  E +  ++I+  G   G  + L LS ++             G+ G +W ++W+   S TP+ H  I+ Y
Sbjct:  189 WAPPLERSKLLSISYAGAQLGTVVSLPLSGVICYYMNWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPY 261          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: S17A5_MOUSE (Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 1.410e-13
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   70 LSPIAGGALVDYYGGKIVMAWGVALGSLATFLTPWAADTSLLALLAMRAVVGLA*GVALPAMNNM 264
            ++ I GG +    GGK+++  G+   S+ T  TP AAD  ++ L+ +RA+ GL  GV  PAM+ M
Sbjct:  121 VTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADLGVVTLVVLRALEGLGEGVTFPAMHAM 185          

HSP 2 Score: 44.669 bits (104), Expect = 1.410e-13
Identity = 22/73 (30.14%), Postives = 33/73 (45.21%), Query Frame = 3
Query:  306 WFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISKY 524
            W P  E +  + I+  G   G  I L LS I+           + G+ G +W ++W+   S TP+ H  IS Y
Sbjct:  189 WAPPLERSKLLTISYAGAQLGTVISLPLSGIICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHY 261          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: S17A5_HUMAN (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 2.379e-13
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   70 LSPIAGGALVDYYGGKIVMAWGVALGSLATFLTPWAADTSLLALLAMRAVVGLA*GVALPAMNNM 264
            ++ I GG +    GGK+++ +G+   ++ T  TP AAD  +  L+ +RA+ GL  GV  PAM+ M
Sbjct:  121 ITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAM 185          

HSP 2 Score: 46.2098 bits (108), Expect = 2.379e-13
Identity = 24/73 (32.88%), Postives = 32/73 (43.84%), Query Frame = 3
Query:  306 WFPHTEEAMAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPVVILGLSGFLWVLVWLSATSSTPDRHPRISKY 524
            W P  E +  ++I+  G   G  I L LS I+             G  G  W L+W+   S TP +H RIS Y
Sbjct:  189 WAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHY 261          
BLAST of FC876950 vs. ExPASy Swiss-Prot
Match: PHT44_ORYSJ (Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   70 LSPIAGGALVDYYGGKIVMAWGVALGSLATFLTPWAADTSLLALLAMRAVVGLA*GVALPAMNNMVAR 273
            L+ I GG   D +GGK+V+ +GV   S+AT LTP AA   L  LL MRA +G+  GVA+PAMNN++++
Sbjct:  233 LTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAMPAMNNILSK 300          
The following BLAST results are available for this feature:
BLAST of FC876950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ANTR4_ARATH1.177e-3047.62Probable anion transporter 4, chloroplastic OS=Ara... [more]
PHT43_ORYSJ1.032e-2646.78Probable anion transporter 3, chloroplastic OS=Ory... [more]
ANTR3_ARATH5.760e-1765.67Probable anion transporter 3, chloroplastic OS=Ara... [more]
PHT42_ORYSJ5.961e-1459.70Probable anion transporter 2, chloroplastic OS=Ory... [more]
S17A5_SHEEP1.410e-1340.00Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1[more]
S17A5_MOUSE1.410e-1338.46Sialin OS=Mus musculus GN=Slc17a5 PE=2 SV=2[more]
S17A5_HUMAN2.379e-1336.92Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
PHT44_ORYSJ3.616e-1150.00Probable anion transporter 4, chloroplastic OS=Ory... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1DD03RM1 EHR Citrus clementina cDNA clone KN0AAN1DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876950 ID=FC876950; Name=FC876950; organism=Citrus clementina; type=EST; length=525bp
GAGGGATTCGGCGCGAGGGCCGATCGTTTTCCGGTATATTTCAATCATCT
TTCCTCTGGGGATACCTGGTTGTCACCGATAGCTGGAGGAGCTTTGGTGG
ATTATTATGGTGGGAAGATAGTCATGGCATGGGGTGTGGCGTTAGGGTCA
TTAGCTACTTTTCTTACTCCTTGGGCTGCTGATACTTCTTTATTGGCTCT
GCTGGCAATGCGAGCTGTTGTTGGACTAGCATAGGGTGTGGCTCTTCCTG
CGATGAACAATATGGTTGCAAGAGATGTTGAGAGATGCTCCTATGCTTTT
TTAGATGGTTTCCTCATACAGAAGAAGCTATGGCTGTTGCTATTGCAATG
GGTGGATTTACATCTGGAAATGCTATAGGACTGGTGTTATCACCGATTCT
CATGTCACAAGCTGGTATTTTTGGGCCGGTTGTGATTTTGGGATTATCGG
GATTTCTATGGGTTTTGGTTTGGTTGTCTGCAACATCTAGTACCCCTGAT
CGACATCCGCGCATATCGAAGTATG
back to top